GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001590-TA|BGIBMGA001590-PA|IPR002653|Zinc finger,
A20-type
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   2.7  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    28   3.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   4.7  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   8.2  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    27   8.2  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   8.2  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 252 LEDSAGNPMPIRFSVDPGEDFRWDVEH-DQKVINNLLPDEYERSAMLAAYLDLERVECVT 310
           L +   +   +R  V+  E  R D++   +   +NL  D   +   L + L   + ECV+
Sbjct: 525 LREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVS 584

Query: 311 QNQPPEELRRSLDALSTK---SSKQLNSVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSSG 367
             +   EL   +D L  K   ++K+   +A  F +      S    N  S+  L  ++  
Sbjct: 585 FQEKINELNSQIDELKLKLNEANKKYQELAISFENSNVKTQSVEPDNGLSLEALKNENQT 644

Query: 368 SQSNPEESLVR 378
              N E+S  R
Sbjct: 645 LLKNLEDSTAR 655


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 309 VTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSSGS 368
           ++Q+        S  A +T SS  ++S      S   SMS+      GS A  +G SSGS
Sbjct: 422 ISQSSTSGSSSGSSSASTTASSSSVSS-GSSISSGSSSMSTSYTSASGSSAHSSGSSSGS 480

Query: 369 QS 370
            S
Sbjct: 481 SS 482


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 289 DEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQ-FGSIGRSM 347
           + +E    + +  DLE  E +    PP+  + S   L TKS   +N +++Q F  I  S 
Sbjct: 214 ENFEFPKKIPSKEDLETREVLLL--PPQTSKLSNKNLDTKSFTDVNKISQQGFVEIS-SN 270

Query: 348 SSKIKKNFGSMAKLTGKSSGSQSN 371
           SSK+  N  S+ +  G +S S +N
Sbjct: 271 SSKVTPN-TSLHQSFGIASSSSNN 293


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 286 LLPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQ--FGSI 343
           L  D++ R  +L   +  E     ++     EL RSLD+L  K+SK+   V +     +I
Sbjct: 428 LSADKFARRILLYVLVGWEDARYFSKEN--RELLRSLDSLKAKTSKKDPIVRRNELKATI 485

Query: 344 GRSMSSKIKKNFGSM 358
           G  + S I K  G M
Sbjct: 486 GPLLISLISKAAGDM 500


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 18/89 (20%)

Query: 342 SIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEESLVRRQSTCEVLCCRVLAARAPVQEEM 401
           ++G+  S    ++F  +AK+T   SGS    + S+V R +  E           PV+   
Sbjct: 307 NVGKIPSELTSQDFKELAKMTDGYSGS----DISIVVRDAIME-----------PVRRIH 351

Query: 402 VKNYLNEAWTGYTAEKNRKEASPCEPGQP 430
              +  E    Y  + NR   +PC PG P
Sbjct: 352 TATHFKEV---YDNKSNRTLVTPCSPGDP 377


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 263 RFSVDPGEDFRWDVEHDQKVINNLLPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSL 322
           R+ +DP + F W       +I  L  +E E + M+A  +  E +E   Q Q   E++  L
Sbjct: 654 RYDIDPEQRFGWTALVSSGLIEYLDAEE-EETVMIA--MSPEDLEASRQMQAGYEVKEEL 710

Query: 323 D 323
           D
Sbjct: 711 D 711


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,798
Number of Sequences: 5004
Number of extensions: 99259
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 6
length of query: 509
length of database: 2,362,478
effective HSP length: 76
effective length of query: 433
effective length of database: 1,982,174
effective search space: 858281342
effective search space used: 858281342
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)