Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001590-TA|BGIBMGA001590-PA|IPR002653|Zinc finger,
A20-type
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 36 0.076
03_04_0193 + 18344984-18345946 35 0.13
03_05_0002 + 19405890-19406222 34 0.23
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 32 1.2
09_02_0256 - 6350559-6350573,6351025-6351762 31 1.6
11_06_0579 - 25181389-25182289,25182556-25182584 31 2.2
02_05_0155 - 26340413-26340870,26341029-26341119 31 2.9
04_03_0771 + 19434460-19434987 30 3.8
04_03_0735 + 19141038-19143227 30 5.0
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 30 5.0
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 30 5.0
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743... 29 6.6
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524... 29 6.6
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 29 6.6
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 29 8.8
07_01_0496 - 3730822-3731280 29 8.8
01_06_0128 - 26727484-26728383 29 8.8
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 35.9 bits (79), Expect = 0.076
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 419 RKEASPCEPGQPRYGTGKSQFYAEADRAAHELARSHA-ARSGRPAADRTLYLSRSTFYVD 477
R+ + C P PR G G+S+ Y+ + + +RS + + SG P A R L SRS Y
Sbjct: 148 RERSYSCSPS-PRRGRGRSRSYSRSRSRSRSYSRSRSRSLSGSPRARRELERSRSLSYSR 206
Query: 478 RP 479
P
Sbjct: 207 SP 208
>03_04_0193 + 18344984-18345946
Length = 320
Score = 35.1 bits (77), Expect = 0.13
Identities = 23/74 (31%), Positives = 30/74 (40%)
Query: 411 TGYTAEKNRKEASPCEPGQPRYGTGKSQFYAEADRAAHELARSHAARSGRPAADRTLYLS 470
+G+++ + + AS SQ A +D A S AA S R LS
Sbjct: 97 SGFSSRSDSRSASSSSSSSSCVSRSTSQKSASSDTAGRSNQPSKAASSDALLPPRRRPLS 156
Query: 471 RSTFYVDRPPSPRP 484
S FY PSPRP
Sbjct: 157 GSLFYAHPSPSPRP 170
>03_05_0002 + 19405890-19406222
Length = 110
Score = 34.3 bits (75), Expect = 0.23
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 101 WWCHGRVPGAPR-LLPLATSGDGNCLPHAASLAAYGFHD 138
WW GR G+PR LL LAT+ + +++ +A YG D
Sbjct: 20 WWLGGRTAGSPRKLLLLATTSMASDQDYSSKIAYYGIED 58
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 31.9 bits (69), Expect = 1.2
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 307 ECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSS 366
+ V NQ + RS + T++S +++S+ + S+ +++ AK + +++
Sbjct: 644 QIVLANQKNNIISRSHN--ETQASSEIDSIGTNDNASTSSVYDLPEESIHQSAKNSTENT 701
Query: 367 GSQSNPEESLVRRQSTCEVLCCRVLAARAPVQEEMVKNY------LNEAWTGYTAEKNRK 420
PEES+++R+ C A+ + E V N+ T K R
Sbjct: 702 SYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVSEIGPEFGPSNDVCKTETVAKKRS 761
Query: 421 EASPCEPG 428
+ +PC+ G
Sbjct: 762 KKTPCDKG 769
>09_02_0256 - 6350559-6350573,6351025-6351762
Length = 250
Score = 31.5 bits (68), Expect = 1.6
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 447 AHELARSHAARSGRPAADRTLYLSRSTFYVDRPPSPRPCRAPLCAYYGSPANDDYCSR 504
A E AR++ A + R + +R+ F D PP P P +AP C +DD +R
Sbjct: 134 AVEAARAYDAEARRIHGHK----ARTNFPPDEPPLPAPSQAPFCFLLDDDDDDDGVAR 187
>11_06_0579 - 25181389-25182289,25182556-25182584
Length = 309
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 169 WSESASLCAAGLVPSEGEWAREWREADYHGDPIAPIPF 206
W+ S S L GEWA+ W + YH + AP PF
Sbjct: 81 WATSTSANKLDLTRFHGEWAQRWVKRYYHHE--APPPF 116
>02_05_0155 - 26340413-26340870,26341029-26341119
Length = 182
Score = 30.7 bits (66), Expect = 2.9
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 151 LSGEYGETITNAIRRRWRWSESASLCAAGLVPSEGEWAREWREADYHGDPIAPIPFGGVY 210
L+GE + A RR R C AG+V + W WR A G A GV+
Sbjct: 65 LAGEAAAVVVEASWRRSRGLVGGEACRAGVVEAGDVWL-SWRPA-LCGSGRASWRPAGVW 122
Query: 211 LPLELDPAQCSRAPVLLA--YDAGHFSAL 237
A+ R VL+A YD+G +A+
Sbjct: 123 SRGRRHGARGQRQRVLVAAGYDSGRLAAM 151
>04_03_0771 + 19434460-19434987
Length = 175
Score = 30.3 bits (65), Expect = 3.8
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 441 AEADRAAHELARSH-AARSGRPAADRTLYLSRSTFYVDRPPSPRPCRAPLCAYYGSP 496
AEAD E H R+G A T+ LSR + + P P P P A P
Sbjct: 74 AEADSTREEAEHGHHRGRAGGEARRHTVVLSRRSLPPESSPPPPPSPEPSTAAVAEP 130
>04_03_0735 + 19141038-19143227
Length = 729
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 32 RGISRATDNEGLVWALRNNTDPEPSTLSSDHILLLPDITVYPPDF 76
RGI R +G WAL N P+ + L+ D ++ +I DF
Sbjct: 594 RGIIRIVPQKGDTWALYRNWSPDWNELTPDDVIYKYEIVEIIDDF 638
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/94 (21%), Positives = 38/94 (40%)
Query: 282 VINNLLPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFG 341
V N P+ + M L+ + Q++ P ++R L S K AK+ G
Sbjct: 213 VRQNKHPNANTENEMTGGDLEKASGSLLDQSKQPLNIKRDRRRLEEVSDKMWKDEAKEIG 272
Query: 342 SIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEES 375
S +++ K + L GK+ +Q +++
Sbjct: 273 SRSPALTKGSTKESQMLQSLDGKAKNAQKRRKDA 306
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 29.9 bits (64), Expect = 5.0
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 332 QLNSVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEESLVRRQSTCEVLCCRVL 391
++ + ++F +I + + S + +F S+ TGK + + +L+++ S C V
Sbjct: 158 KITELREKFKNIKKILKSHVFSDFTSLG--TGKET-----EDATLLQQLSDA---CLVVD 207
Query: 392 AARAPVQEEMVKNYLNEAWTGYTAEKNRKEASPCEPGQPRYGTGKSQFYAEAD 444
A V+EE+VKN+ ++ T Y E + + + RY K + + D
Sbjct: 208 ALEPSVREELVKNFCSKELTSYKQIFEGAELAKLDKTERRYAWIKRRLRSNED 260
>07_01_1156 -
10873223-10873417,10873498-10873579,10874235-10874336,
10874456-10874553,10874692-10874778,10874869-10875317,
10875414-10875744,10875766-10875884,10875935-10876124,
10876319-10876657,10876735-10876875,10876958-10877440,
10877703-10877901,10879447-10879643
Length = 1003
Score = 29.5 bits (63), Expect = 6.6
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 406 LNEAWTGYTAEKNRKEASPCEPGQPRYGTGKSQFYAEADRAAHELARSHAARSGRPAADR 465
+N T E N++ AS E R G+GK+ DRA E A S + A
Sbjct: 11 MNNVVTAVVMENNQRRASISELAYNRRGSGKAPHDGGGDRAVVEEAEQRRTDSSQRAVMA 70
Query: 466 T 466
T
Sbjct: 71 T 71
>05_07_0333 -
29351372-29351665,29351786-29351928,29352374-29352434,
29352950-29353034,29353254-29353292,29353487-29353557,
29353640-29353735,29353869-29354017,29354106-29354175,
29354752-29354792,29354902-29354977
Length = 374
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 335 SVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEESLVRRQST 382
S+AKQ IG S+ F S L G+SSGS P S R ST
Sbjct: 258 SLAKQKSPIGHEQSTSKDAVFSSSTFL-GRSSGSSRRPAVSSSREPST 304
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 29.5 bits (63), Expect = 6.6
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 284 NNLLPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFG-S 342
NN +P E E+ + +E E + PP+E S D + K S AK+ G S
Sbjct: 94 NNTVPSEEEKFSENTVEKPVESSE---EKAPPKEKEESKDTFDDANGKTEQSSAKEDGDS 150
Query: 343 IGRSMSSKIKKNFGSMAKLTGKSSGSQSNPE 373
S S KN K K QS+ E
Sbjct: 151 ESGSGQSDGSKNGDDEEKSEEKKDDEQSDGE 181
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 29.1 bits (62), Expect = 8.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 41 EGLVWALRNNTDPEPSTLSSDHILLLPDITVYPPDFRTFLEK 82
E ++WAL N P PS +HI LLP T PP ++K
Sbjct: 312 EAVLWALLNQGPPPPS--MRNHINLLP--TALPPQVGMAMDK 349
>07_01_0496 - 3730822-3731280
Length = 152
Score = 29.1 bits (62), Expect = 8.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 490 CAYYGSPANDDYCSRCAKLQ 509
C ++GS A D CS+C K Q
Sbjct: 22 CGFFGSAATDGLCSKCYKQQ 41
>01_06_0128 - 26727484-26728383
Length = 299
Score = 29.1 bits (62), Expect = 8.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 217 PAQCSRAPVLLAYDAGHFSALVPCEPLPAAGARVPL--EDSAGNPMPIRFSVDPGEDFRW 274
P+ CS A Y+AG PCEP AAG+ + + E+ G +P + G W
Sbjct: 196 PSLCSLAEDKDDYEAG------PCEPATAAGSNLTVLEEEELGEFVPFEDAPVYGGSSFW 249
Query: 275 DVE 277
D E
Sbjct: 250 DFE 252
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,744,885
Number of Sequences: 37544
Number of extensions: 770073
Number of successful extensions: 2274
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2266
Number of HSP's gapped (non-prelim): 19
length of query: 509
length of database: 14,793,348
effective HSP length: 85
effective length of query: 424
effective length of database: 11,602,108
effective search space: 4919293792
effective search space used: 4919293792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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