Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001590-TA|BGIBMGA001590-PA|IPR002653|Zinc finger,
A20-type
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 2e-26
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 58 1e-08
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 45 2e-04
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18) 34 0.24
SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002) 33 0.72
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.9
SB_32912| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.8
SB_18528| Best HMM Match : Homeobox (HMM E-Value=1.3e-16) 30 5.1
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.9
SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8) 29 8.9
>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 117 bits (282), Expect = 2e-26
Identities = 62/130 (47%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 65 LLPDITVYPPDFRTFLEKDXXXXXXXXXXXXXNILNWWCHGRVPGAPRLLPLATSGDGNC 124
+LPD+T YP DF FL +D LNWW V RL+PLAT GDGNC
Sbjct: 104 VLPDLTRYPQDFSEFLRRDLIETSTLVSLEQSGHLNWWADMGV--CQRLVPLATVGDGNC 161
Query: 125 LPHAASLAAYGFHDRLLALRTKVQALLSGEYGETITNAIRRRWRWSE-SASLCAAGLVPS 183
L HAASL +GFHDRLL LR +AL G+ + AI+RRWR + ++ A GL+ +
Sbjct: 162 LLHAASLGMWGFHDRLLTLR---KALFRTLVGDKASGAIKRRWRLQQWVKNMEAGGLIYT 218
Query: 184 EGEWAREWRE 193
E EWAREW E
Sbjct: 219 EEEWAREWEE 228
Score = 89.8 bits (213), Expect = 4e-18
Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 16/241 (6%)
Query: 195 DYHGDPIAPIPFGGVYLPLELDPAQCSRAPVLLAYDAGHFSALVPCEPLPAAGAR----- 249
D+ GD IAPIPFGG++LPLE P QC + P++L +++ HFSA+V + +
Sbjct: 349 DFSGDAIAPIPFGGIFLPLECPPEQCYKNPLVLTFESAHFSAVVASDGKQNGSKKEKVLV 408
Query: 250 --VPLEDSAGNPMPIRFSVDPGEDFRWDVEHDQKVINNLLPDEYERS-AMLAAYLDLERV 306
VP+ + +PI FSVDPG DF W+ E +V + + E+ +L YL++ V
Sbjct: 409 SGVPVVGPNYDLLPIHFSVDPGADFAWE-ELSARVKDQHMELSMEQKLILLGKYLEIAEV 467
Query: 307 ECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSS 366
+ + + S + + ++++++ K S + K+ N G K +G
Sbjct: 468 KIPGTGKDLSKDGNSGEKCTAHAAEKIDPKNKDAKS-KQDSKLKLGSNKGDKGKGSGSWL 526
Query: 367 GSQSNPEESLVRRQST---CEVLCCRVLAARAPV-QEEMVKNYLNEAWTGYTAEKNRKEA 422
++ +L T V ++ A PV ++M++NY+ A + E+ KEA
Sbjct: 527 ANKLVKVGNLAGALGTTVHSMVYVAKLQANNKPVYYDKMIENYIQSAKQRF--ERGEKEA 584
Query: 423 S 423
S
Sbjct: 585 S 585
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 58.4 bits (135), Expect = 1e-08
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 190 EWREADYHGDPIAPIPFGGVYLPLELDPAQCSRAPVLLAYDAGHFSALVPCEPLPAAGA- 248
E E +Y + ++P+ GG+YLPL DP +C + P+L+ Y GHF+ALV E A
Sbjct: 138 EDHEGNYD-ESLSPVNLGGIYLPLNWDPVECVKTPLLIGYAQGHFTALVSIEDGNAGAGD 196
Query: 249 -----RVPLEDSAGNPMPIRFSVDPGE 270
VPL G+ +P+ F + E
Sbjct: 197 THKIHGVPLVKPDGSALPVHFLLSDEE 223
Score = 43.2 bits (97), Expect = 5e-04
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 66 LPDITVYPPDFRTFLEKDXXXXXXXXXXXXXNILNWWCHGRVPGAPRLLPLATSGDGNCL 125
LP + Y F+ FL LNW C ++P+ T GDGNCL
Sbjct: 56 LPSLNKYDEGFQKFLFSYLLDVPIFRELQAERKLNW-CSA----LHTVVPVLTLGDGNCL 110
Query: 126 PHAASLAAYGFHDRLLALRTKVQALL----SGEYGETIT 160
HAAS+ + DR LR V ++ G Y E+++
Sbjct: 111 MHAASIGMWAVSDRYQVLRKAVYDVMIEDHEGNYDESLS 149
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 455 AARSGRPAADRTLYLSRSTFYVDRPPSPRP---------CRAPLCAYYGSPANDDYCSRC 505
A R T Y +++ ++ R P P C P C YG+P + YCS+C
Sbjct: 1083 AGHDPRAWGTTTTYSAQAPVHISRQREPGPGMETGLQSKCVRPGCQMYGAPETNGYCSKC 1142
Score = 29.9 bits (64), Expect = 5.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 482 PRPCRAPLCAYYGSPANDDYCSRC 505
P CR C ++G P+ D CS C
Sbjct: 625 PEKCRNNDCTFFGLPSQDGLCSSC 648
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 196 YHGDPIAPIPFGGVYLPLELDPAQCSRAPVLLAYDAGHFSALVPCE 241
+ G+ + F GVYLPL + + C + PV+L Y GHFSALV E
Sbjct: 866 FRGETLGLARFQGVYLPLLWERSFCWKNPVVLGYTRGHFSALVAME 911
Score = 30.7 bits (66), Expect = 2.9
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 98 ILNWWCHGRVPGAPRLLPLATSGDGNCLPHAASLAAYGFHDRLLALRTKVQALLSGEYGE 157
++NW R+ PL S G+CL + A YG D+ LR + LS G
Sbjct: 737 VINWSVEITEQLGSRIFPLWKSSAGDCLLDSLLQATYGVFDKDNTLRKALFESLS--EGS 794
Query: 158 TITNAIRRRWRWSESASLCAAGLVPSEGEWAREW 191
+ A + W ++ +L + E +W ++W
Sbjct: 795 SRFFARYKEWESMQAETLQYS---LDEDQWEQDW 825
>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
Length = 1311
Score = 34.3 bits (75), Expect = 0.24
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 112 RLLPLATSGDGNCLPHAASLAAYGFHDRLLALRTKVQA 149
RL+P+ GDG+CL HA S A G ALRT + +
Sbjct: 172 RLVPIHVDGDGHCLVHAVSRALIGREIFWHALRTNLSS 209
>SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)
Length = 460
Score = 32.7 bits (71), Expect = 0.72
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 290 EYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSS 349
+Y +S +L+ LE+ CV Q RR D ++ + + V ++ G++GR S
Sbjct: 290 KYRQSVVLSFAGILEKFGCVQQAGQAVSYRRQHDDITNAGNNETTVVIEE-GTVGR-QSE 347
Query: 350 KIKKNFGSMAKLTGKSSGSQSNPEESLVRRQSTCEVLCCR 389
++ +N AK ++G S +E+ + ST VL R
Sbjct: 348 EVGENTRVGAK-NEAAAGEISETQENRLASNSTVTVLTYR 386
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 30.7 bits (66), Expect = 2.9
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 277 EHDQKVINNL--LPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLN 334
E +K++ + L D E L LE+V C + + EE ++ ++K SK+
Sbjct: 974 EDKKKLLKEIQDLEDSLEEEESARQKLHLEKVSCEAKIKKLEEDLSLVEDTNSKISKEKK 1033
Query: 335 SVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEESL 376
++ ++ + +++ + +K+ G +AK K ++ EE L
Sbjct: 1034 TLEEKLNELDQALIDEEEKSKG-LAKQKAKQDAMIADLEERL 1074
>SB_32912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 30.3 bits (65), Expect = 3.8
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 316 EELRRSLDALSTKSSKQ-LNSVAKQFG-SIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPE 373
+ ++ L++L TK K LN +A+ ++ + S I + GS K+ + S +
Sbjct: 213 QSVQALLNSLFTKRQKDSLNEIARHLNDALSKESVSPISR--GSPGKVNSEHLHSLAQKF 270
Query: 374 ESLVRRQSTCEVLCCRVLAARAPVQ----EEMVKNYLNEAWTGYTAEKNRKEASPCEPGQ 429
+ + +C L +AA + ++ E M NE +G + NR ++ C PG
Sbjct: 271 KGQPKAFKSCSGLLQIAMAAVSALKHKNLEHMEDLLSNEKVSGGSYGANRVRSNSCSPGD 330
Query: 430 P 430
P
Sbjct: 331 P 331
>SB_18528| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)
Length = 390
Score = 29.9 bits (64), Expect = 5.1
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 280 QKVINNLLPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQ 339
Q + + LLP E + AM L + V + P+ R D +ST ++ N A
Sbjct: 153 QTLASKLLPAESPQDAMPQGRLHSYDITSVRSKKYPKSSRSYKDNISTAHLRKANEAAHS 212
Query: 340 FGS 342
+GS
Sbjct: 213 YGS 215
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 29.5 bits (63), Expect = 6.7
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 311 QNQPPEELRRSLDALSTKSSKQLNSVAKQF--GSIGRSMSSKIKKNFGSMAKLTGKSSGS 368
QNQP E+L + + LS SS SI ++ ++ G + S
Sbjct: 4557 QNQPAEKLEQKVLGLSLDSSPPTKRPPPPVKPKSIKKTSPKEVAPKPGGSPHAPRAKASS 4616
Query: 369 QSNPEESLVRRQSTCEVLCCRVLAARAPVQEEMVKNYLNEAWTGYT--AEKNRKEASPCE 426
S ++ R+ V+A VQ E ++ + +++G T E R +PC
Sbjct: 4617 FSGQMGPVIAREGRLSPKPDAVVAREGRVQAEPNRSKAS-SFSGQTEIEESQRVGTTPCA 4675
Query: 427 PGQP---RYGTGKS 437
G+P R+ TG +
Sbjct: 4676 TGEPTTRRFSTGSN 4689
>SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 29.1 bits (62), Expect = 8.9
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 289 DEYERSAMLAAY---LDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGR 345
+E R+ M+ + +DLE++E VT N+ EEL+ L ++S++ + + S +
Sbjct: 266 EEKVRNMMMLKFGRLVDLEKLETVTVNRTVEELKEKLRQAESESARDVAKWDSKIDSYKQ 325
Query: 346 SMSSKIKKN 354
+ ++N
Sbjct: 326 KSTQLTREN 334
>SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)
Length = 680
Score = 29.1 bits (62), Expect = 8.9
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 344 GRSMSSKIKKNFGSMAKLTGKSSGSQSNPEESLVRRQSTCEVLCCRVLAARAPVQEEMVK 403
G+ +++ I+ + + + N E+ +V + CE + C+ + +
Sbjct: 167 GKDLNAGIESARAKLQAAKDRLKEEKENCEKRVVSHCAMCEEIACKQITDSCNSAMDSFN 226
Query: 404 NYLNEA---WTGYTAEKNRKEASPCEPGQPRYGTGKSQFYAEADRAAH 448
N++ A + G+ K +K A + R FY D AH
Sbjct: 227 NFIGGAANRFGGWAVGKAKKIADKFKSKAERRKRSIEHFYGRPDMMAH 274
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,341,330
Number of Sequences: 59808
Number of extensions: 785692
Number of successful extensions: 1757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 21
length of query: 509
length of database: 16,821,457
effective HSP length: 85
effective length of query: 424
effective length of database: 11,737,777
effective search space: 4976817448
effective search space used: 4976817448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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