GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001590-TA|BGIBMGA001590-PA|IPR002653|Zinc finger,
A20-type
         (509 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   7.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 5   SVDTLDMAFTGPSNLVLTPAPECRKLSRGISRATDNEGLVWALRNNT 51
           S D LD+A      L+L P   C+ +    S   +  GL+ + R N+
Sbjct: 448 SPDPLDLAIPVRETLILPPRKRCKMILE--SMEIERNGLIASQRQNS 492


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 186 EWAREWREADYHGDPIAPIPFGGVYLP 212
           ++  +W EADY G  +  +P   V+ P
Sbjct: 85  DYQLQWDEADYGGIGVLRLPPDKVWKP 111


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,729
Number of Sequences: 429
Number of extensions: 6959
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 509
length of database: 140,377
effective HSP length: 61
effective length of query: 448
effective length of database: 114,208
effective search space: 51165184
effective search space used: 51165184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)