Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001590-TA|BGIBMGA001590-PA|IPR002653|Zinc finger,
A20-type
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.084
At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein c... 31 1.8
At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein c... 31 1.8
At1g15260.1 68414.m01826 expressed protein EST gb|N65467 comes f... 30 3.2
At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein c... 30 3.2
At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein c... 30 3.2
At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c... 30 4.2
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c... 30 4.2
At4g30790.1 68417.m04362 expressed protein 29 7.3
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi... 29 9.7
At4g31880.1 68417.m04531 expressed protein 29 9.7
At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family... 29 9.7
At4g24170.1 68417.m03468 kinesin motor family protein contains P... 29 9.7
At3g10570.1 68416.m01268 cytochrome P450, putative similar to cy... 29 9.7
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 35.5 bits (78), Expect = 0.084
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 281 KVINNLLPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQF 340
KV+N +Y A +A Y LE V V+ P SLD +K K+ +S A F
Sbjct: 214 KVVNLWDLHDYSCKATVATYEVLEAVTTVSSGTPFASFVASLDQKKSK-KKESDSQATYF 272
Query: 341 GSIGRSMSSKIKKNFGSMAKLTGKSSG--SQSNPEES 375
++G +I K+ GS+ KSS S+ EES
Sbjct: 273 ITVGERGVVRIWKSEGSICLYEQKSSDITVSSDDEES 309
>At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 176
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 472 STFYVDRPPSPRPCRAPLCAYYGSPANDDYCSRC 505
++F + P+ C C ++GSP+N D CS+C
Sbjct: 9 TSFTQSQASEPKLC-VKGCGFFGSPSNMDLCSKC 41
>At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 176
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 472 STFYVDRPPSPRPCRAPLCAYYGSPANDDYCSRC 505
++F + P+ C C ++GSP+N D CS+C
Sbjct: 9 TSFTQSQASEPKLC-VKGCGFFGSPSNMDLCSKC 41
>At1g15260.1 68414.m01826 expressed protein EST gb|N65467 comes from
this gene
Length = 178
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 338 KQFGSIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEESLVRRQSTCEVLCCRVLAARAPV 397
K GSI ++ S KN + L S S+ PE+S + + + V+CC A
Sbjct: 18 KTLGSIKSTICSSDYKNLPNDTPLLSPYSCSRRCPEDSQTQTKESYTVICCDTAVADTTH 77
Query: 398 QEEM 401
Q+ +
Sbjct: 78 QKSL 81
>At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 168
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 479 PPSPRPCRAPLCAYYGSPANDDYCSRC 505
P P+ C C ++GSP+N + CS+C
Sbjct: 13 PSEPKLC-VKGCGFFGSPSNMNLCSKC 38
>At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 168
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 479 PPSPRPCRAPLCAYYGSPANDDYCSRC 505
P P+ C C ++GSP+N + CS+C
Sbjct: 13 PSEPKLC-VKGCGFFGSPSNMNLCSKC 38
>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 29.9 bits (64), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 479 PPSPRPCRAPLCAYYGSPANDDYCSRC 505
P P+ C C ++GSP+N + CS+C
Sbjct: 13 PTEPKLCDNG-CGFFGSPSNMNLCSKC 38
>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 29.9 bits (64), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 479 PPSPRPCRAPLCAYYGSPANDDYCSRC 505
P P+ C C ++GSP+N + CS+C
Sbjct: 13 PTEPKLCDNG-CGFFGSPSNMNLCSKC 38
>At4g30790.1 68417.m04362 expressed protein
Length = 1148
Score = 29.1 bits (62), Expect = 7.3
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 278 HDQKVINNLLPDEYERSAMLAAYLDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVA 337
H ++N E RSA + YL E +C+ + L+++++ ++ S +Q +
Sbjct: 206 HSDLLMNFGRDIEKLRSAKIHPYLQTESRKCLLDFVKEDNLKKAVENCAS-SHRQFENKI 264
Query: 338 KQFGSIGRSMSSKIKKNFGSMAKLTGKS 365
QF + + K+++ F A L+ K+
Sbjct: 265 AQFQQMFVEVKRKVEELFACRASLSMKN 292
>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 738
Score = 28.7 bits (61), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 282 VINNLLPDEYERSAMLAAYLDL 303
+ NN+LPDEY S++ A+ DL
Sbjct: 157 ITNNVLPDEYTLSSVFKAFSDL 178
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 342 SIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEE 374
++G+S SS+ KK+ S++K +GKS S EE
Sbjct: 761 TVGKSGSSRSKKDISSVSK-SGKSKASSKKKEE 792
>At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member At5g52430
[Arabidopsis thaliana];
Length = 449
Score = 28.7 bits (61), Expect = 9.7
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 308 CVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSSG 367
C T + E + L + ST S+K+ +F S M KI+ + + K+ GK
Sbjct: 378 CKTSGETESEQSQKLRSFSTGSNKEF-----KFDSTNEEMIEKIRSEWWANEKVAGKGDH 432
Query: 368 SQSN 371
S N
Sbjct: 433 SPRN 436
>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1004
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 331 KQLNSVAKQFGSIGRSMSSKIKKNFGSMAKLTGKSSGSQSNPEESLVRRQSTCEV 385
++L S+ + IG + ++I + +LT +SS Q +PE S S C V
Sbjct: 176 EELLSICETQRKIGETSLNEISSRSHQILRLTIESSSQQFSPESSATLAASVCFV 230
>At3g10570.1 68416.m01268 cytochrome P450, putative similar to
cytochrome P450 77A3 GB:O48928 [Glycine max]
Length = 513
Score = 28.7 bits (61), Expect = 9.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 35 SRATDNEGLVWALRN 49
S A DN+GLVW LRN
Sbjct: 176 SEAKDNDGLVWVLRN 190
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,726,989
Number of Sequences: 28952
Number of extensions: 549079
Number of successful extensions: 1354
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 15
length of query: 509
length of database: 12,070,560
effective HSP length: 84
effective length of query: 425
effective length of database: 9,638,592
effective search space: 4096401600
effective search space used: 4096401600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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