Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001589-TA|BGIBMGA001589-PA|IPR000008|C2
calcium-dependent membrane targeting, IPR001565|Synaptotagmin,
IPR008973|C2 calcium/lipid-binding region, CaLB
         (312 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    26   0.31 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    26   0.41 
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   2.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.0  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 1   MGALGTGPVCPYGKDGFVNSLYTPHLIYVYFD-----FYHPIFVVIQSCHLRYENEKNAL 55
           MG LG   +C + K+G +    T  + Y+Y D     F +P  V +++ + +  N    +
Sbjct: 288 MGTLGYNELCEFHKNGIIEWDDTQKVPYLYDDTLWVGFDNPKSVALKAQYAKDNNLAGVM 347

Query: 56  VVSV 59
           + S+
Sbjct: 348 IWSI 351


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1   MGALGTGPVCPYGKDGFVNSLYTPHLIYVYFDFYHPIFVVIQSCHLR--YENEKNALVVS 58
           +G+LG   +C + ++G V  L    + Y+Y D +   +   QS  ++  Y  EKN   V 
Sbjct: 289 LGSLGYNEICEFHRNGTVVFLDDMKVPYMYEDTFWIGYDNEQSVTIKTEYAKEKNLAGVF 348

Query: 59  VVSCQ 63
           + S +
Sbjct: 349 IWSIE 353


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 22  YTPHLIYVYFDFYHPIFVVIQSCHLR 47
           Y    + +YF FY+  F+ +  C  R
Sbjct: 145 YLAEAVQLYFQFYYTYFLCVIVCIFR 170


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 211  YVKMYLLYNGQRIAKKKTHVKKRTLNPVFNESFVFE 246
            YV+  +     R+++ +  V+ R  N   NE+FVF+
Sbjct: 1421 YVQQRMSIAPNRVSQARPSVQLRYPNGKANENFVFD 1456


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 211  YVKMYLLYNGQRIAKKKTHVKKRTLNPVFNESFVFE 246
            YV+  +     R+++ +  V+ R  N   NE+FVF+
Sbjct: 1421 YVQQRMSIAPNRVSQARPSVQLRYPNGKANENFVFD 1456


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 129 DRYSRDEIIGEVVSPLSNLQLHSGEAMALCREIQPRSLKMRSAGRGEVL 177
           D + R+E+  ++  P S +Q+      A CR+ Q +  + +S  +   L
Sbjct: 95  DIFMREEVALKINLPESRVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKL 143


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.139    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,715
Number of Sequences: 317
Number of extensions: 3207
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 312
length of database: 114,650
effective HSP length: 57
effective length of query: 255
effective length of database: 96,581
effective search space: 24628155
effective search space used: 24628155
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)