GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001588-TA|BGIBMGA001588-PA|undefined
         (171 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.4  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   4.1  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   4.1  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   4.1  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 22  IWVMTVVLGTILLAL-CVG 39
           +W+ T++L TILLA  C G
Sbjct: 288 LWITTLLLFTILLAYGCAG 306


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
          peptide isoform C protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 60 CPDKALVFQPPRRATAVRSPGSATHYLRK 88
          C   A+VFQ    + A RSP    H+  K
Sbjct: 17 CMVLAVVFQEITSSPAGRSPAFLPHHFTK 45


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
          peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 60 CPDKALVFQPPRRATAVRSPGSATHYLRK 88
          C   A+VFQ    + A RSP    H+  K
Sbjct: 17 CMVLAVVFQEITSSPAGRSPAFLPHHFTK 45


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
          peptide isoform A protein.
          Length = 140

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 60 CPDKALVFQPPRRATAVRSPGSATHYLRK 88
          C   A+VFQ    + A RSP    H+  K
Sbjct: 17 CMVLAVVFQEITSSPAGRSPAFLPHHFTK 45


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,798
Number of Sequences: 317
Number of extensions: 678
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 171
length of database: 114,650
effective HSP length: 53
effective length of query: 118
effective length of database: 97,849
effective search space: 11546182
effective search space used: 11546182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)