GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001588-TA|BGIBMGA001588-PA|undefined
         (171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0383 + 7966929-7968951,7969085-7969104                           31   0.49 
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376           30   1.1  
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    27   8.0  

>03_02_0383 + 7966929-7968951,7969085-7969104
          Length = 680

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 50  SLSHKLGSKRCPDKALVFQPPRRATAVRSPGSATHYL 86
           SL   L  KRCP+  LV + PRR    R   +A HYL
Sbjct: 206 SLQDALLGKRCPE--LVSEWPRRLAVARDVAAALHYL 240


>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
          Length = 746

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 50  SLSHKLGSKRCPDKALVFQPPRRATAVRSPGSATHYL 86
           SL   L  +RCP+  LV + PRR    R   +A HYL
Sbjct: 211 SLQDALLGRRCPE--LVAEWPRRLAVARDVAAALHYL 245


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 22  IWVMTVVLGTILLALCVGIACWIVRFKSSLSHKLGSKRCPD 62
           +W+++VV+G+I + + V + C  V F  + +   G +  P+
Sbjct: 955 LWLLSVVIGSISMIISVILKCIPVEFNKTNTKPHGYELIPE 995


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,318
Number of Sequences: 37544
Number of extensions: 94623
Number of successful extensions: 218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 14,793,348
effective HSP length: 77
effective length of query: 94
effective length of database: 11,902,460
effective search space: 1118831240
effective search space used: 1118831240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)