GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001588-TA|BGIBMGA001588-PA|undefined
         (171 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_654| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-25)                   32   0.29 
SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_654| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-25)
          Length = 293

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 23  WVMTVVLGTILLALCVGIACWIVRFKSSLSHKLGSKRCPDKALV 66
           WV  V+L T++L  CV I C++  FK +  H    +  P  A+V
Sbjct: 163 WVTHVIL-TVILPACVVIVCYVKIFKIAKRHSRDERVRPSVAVV 205


>SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 17  LETDTIWVMTVVLGTILLALCVGIACWIVRFKSSLSHKLGS 57
           L  +  W+ +  LGT+L    +GI  W+  +K S++  + S
Sbjct: 116 LYVELAWIFSTGLGTLLFLGEIGILSWVKFYKYSIAAAIAS 156


>SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 22  IWVMTVVLGTILLALCVGIACWIVRFKS 49
           +WV T+VLG I + L  G  C+ VR+++
Sbjct: 462 LWV-TIVLGMIGILLASGFLCFNVRYRN 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,608,331
Number of Sequences: 59808
Number of extensions: 98698
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 16,821,457
effective HSP length: 77
effective length of query: 94
effective length of database: 12,216,241
effective search space: 1148326654
effective search space used: 1148326654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)