GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001588-TA|BGIBMGA001588-PA|undefined
         (171 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.1  
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    23   2.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.7  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    22   3.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
          RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 32 ILLALCVGIACWIVR 46
          +LL +C+GIAC  +R
Sbjct: 5  LLLMVCLGIACQNIR 19


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
          protein MRJP4 protein.
          Length = 27

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 32 ILLALCVGIACWIVR 46
          +LL +C+GIAC  +R
Sbjct: 5  LLLMVCLGIACQNIR 19


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 32 ILLALCVGIAC 42
          +LL +C+GIAC
Sbjct: 5  LLLVVCLGIAC 15


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
          protein MRJP3 protein.
          Length = 31

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 32 ILLALCVGIAC 42
          +LL +C+GIAC
Sbjct: 5  LLLVVCLGIAC 15


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
          protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 32 ILLALCVGIAC 42
          +LL +C+GIAC
Sbjct: 5  LLLVVCLGIAC 15


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 32  ILLALCVGIACWIVRFKSSLSHKL 55
           + +++CV +    V F+S  +HK+
Sbjct: 318 VSISICVTVVVLNVHFRSPQTHKM 341


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 32  ILLALCVGIACWIVRFKSSLSHKL 55
           + +++CV +    V F+S  +HK+
Sbjct: 318 VSISICVTVVVLNVHFRSPQTHKM 341


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,544
Number of Sequences: 429
Number of extensions: 828
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 171
length of database: 140,377
effective HSP length: 54
effective length of query: 117
effective length of database: 117,211
effective search space: 13713687
effective search space used: 13713687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)