GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001588-TA|BGIBMGA001588-PA|undefined
         (171 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   2.9  
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote...    27   6.7  

>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 3   TKFQVNRMHGSAGGLETDTIWVMTVVLGTILLALCVGIACWIVRFKSSLSHKLGSKRCPD 62
           T  Q  R H        D I +    L  ILL LC  + C +++ +++L  K G  +  +
Sbjct: 441 TSSQEPRKHHHRKLSVKDVILIAIGALLAILLLLCCILLCCLIKKRAALKQKDGKDKTSE 500

Query: 63  KAL 65
           K +
Sbjct: 501 KTV 503


>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 receptor type
           precursor, Oryza sativa, PIR:A57676
          Length = 1025

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 21  TIWVMTVVLGTILLALCVGIACWI-VRFKS 49
           TI V  V+   +LL LCV   CW  +R KS
Sbjct: 656 TICVSAVMAALLLLCLCVVYLCWYKLRVKS 685


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,818
Number of Sequences: 28952
Number of extensions: 70129
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 2
length of query: 171
length of database: 12,070,560
effective HSP length: 76
effective length of query: 95
effective length of database: 9,870,208
effective search space: 937669760
effective search space used: 937669760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)