GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001587-TA|BGIBMGA001587-PA|IPR000533|Tropomyosin,
IPR009053|Prefoldin
         (284 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.44 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 48  KKLAQVEEDLILNKNKLEQANKDLEEKEKQLTATEAEVAALNRKVQQIEEDLEKSEERSG 107
           K L  V +   +NK +   + K+   K+++ TAT  +    +RK Q+  E+ +   +   
Sbjct: 766 KALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEE-KNINDHCV 824

Query: 108 TAQQKLLEAQQSADENNRMCKVL 130
           T +Q ++    +   N     V+
Sbjct: 825 TTEQSVVVTNVTTTINTPTTSVI 847


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 36  AEKVNEEVRELQKKLAQVEEDLILN 60
           AEK+ EE++ + ++L  +E +L++N
Sbjct: 855 AEKIAEELKIVPEELVPLEGNLMIN 879


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 108 TAQQKLLEAQQSADENNRMCKVLENRAQQDEERMDQLTNQLKE 150
           T QQ+ ++AQQ   +  +  + + N AQQ +++  Q   Q ++
Sbjct: 412 TEQQQQMQAQQQHQQQQQQTQHVIN-AQQPQQQQQQQQQQQQQ 453



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/76 (18%), Positives = 33/76 (43%)

Query: 43  VRELQKKLAQVEEDLILNKNKLEQANKDLEEKEKQLTATEAEVAALNRKVQQIEEDLEKS 102
           +REL KK+  +     L+  KL       ++++ Q      +     + V   ++  ++ 
Sbjct: 385 LRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444

Query: 103 EERSGTAQQKLLEAQQ 118
           +++    QQ+  + QQ
Sbjct: 445 QQQQQQQQQQQQQQQQ 460


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 115 EAQQSADENNRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSR 167
           +   S D  +RM +V         +RMD++    +  R+   D   ++D++SR
Sbjct: 460 DKMSSMDRMDRMDRVDTMDTMDTMDRMDRMDRMDRMDRMDRMDTMDRTDKMSR 512


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 137 DEERMDQLTNQLKEARLLAEDADGKSD 163
           D  R+D + +  ++ARLL E +  ++D
Sbjct: 218 DGFRIDAINHMFEDARLLDEPSANRTD 244


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 163 DEVSRKLAFVEDELEVA 179
           D+V RK   V DE +VA
Sbjct: 119 DDVHRKFLHVNDECDVA 135


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.303    0.121    0.298 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,280
Number of Sequences: 429
Number of extensions: 2965
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 284
length of database: 140,377
effective HSP length: 57
effective length of query: 227
effective length of database: 115,924
effective search space: 26314748
effective search space used: 26314748
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
S2: 43 (21.4 bits)