GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001586-TA|BGIBMGA001586-PA|undefined
         (126 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   3.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   3.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   8.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   8.2  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 9   CDPGVHYDRDGISESW 24
           C PG+ YDR+     W
Sbjct: 124 CSPGLAYDREARVCMW 139


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 9   CDPGVHYDRDGISESW 24
           C PG+ YDR+     W
Sbjct: 124 CSPGLAYDREARVCMW 139


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 9   CDPGVHYDRDGISESWIFGTE 29
           C P V  + +   E+W+ G E
Sbjct: 121 CTPTVLVEVNSRPETWVLGRE 141


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 9   CDPGVHYDRDGISESWIFGTE 29
           C P V  + +   E+W+ G E
Sbjct: 121 CTPTVLVEVNSRPETWVLGRE 141


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,216
Number of Sequences: 317
Number of extensions: 539
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 126
length of database: 114,650
effective HSP length: 50
effective length of query: 76
effective length of database: 98,800
effective search space:  7508800
effective search space used:  7508800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)