GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001586-TA|BGIBMGA001586-PA|undefined
         (126 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical pr...    27   5.3  

>Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 60  RMEVPRKEAFVTRNGSVRDFQGYD 83
           R+E+P+K +F  +NGS R    +D
Sbjct: 135 RIEIPKKRSFSRKNGSFRSSFEFD 158


>Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 60  RMEVPRKEAFVTRNGSVRDFQGYD 83
           R+E+P+K +F  +NGS R    +D
Sbjct: 135 RIEIPKKRSFSRKNGSFRSSFEFD 158


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,421
Number of Sequences: 27539
Number of extensions: 56223
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 2
length of query: 126
length of database: 12,573,161
effective HSP length: 73
effective length of query: 53
effective length of database: 10,562,814
effective search space: 559829142
effective search space used: 559829142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)