GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001586-TA|BGIBMGA001586-PA|undefined
         (126 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15520.1 68414.m01867 ABC transporter family protein similar ...    28   2.2  

>At1g15520.1 68414.m01867 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1423

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query: 76   VRDFQGYDSGFIGIASSLKIV 96
            +R+F GY  GF+G+ +++ ++
Sbjct: 1382 IREFYGYREGFLGVVAAMNVI 1402


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,298
Number of Sequences: 28952
Number of extensions: 53829
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 1
length of query: 126
length of database: 12,070,560
effective HSP length: 73
effective length of query: 53
effective length of database: 9,957,064
effective search space: 527724392
effective search space used: 527724392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)