Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001585-TA|BGIBMGA001585-PA|IPR000533|Tropomyosin,
IPR010978|tRNA-binding arm, IPR009053|Prefoldin
         (257 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 88  KSLEVSEEKANQREEEYKNQIKTLTTRLKEATKREETYETHLKLLDAQLKEAMASREHVE 147
           + L + +     R  + +  +KT      +  K +E YET     DA   +A+ + +H+ 
Sbjct: 502 EGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHI- 560

Query: 148 DKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQ 196
                   ++             + +  K + RL++D  A R   K L+
Sbjct: 561 -------TRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR 602


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 88  KSLEVSEEKANQREEEYKNQIKTLTTRLKEATKREETYETHLKLLDAQLKEAMASREHVE 147
           + L + +     R  + +  +KT      +  K +E YET     DA   +A+ + +H+ 
Sbjct: 502 EGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHI- 560

Query: 148 DKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQ 196
                   ++             + +  K + RL++D  A R   K L+
Sbjct: 561 -------TRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR 602


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 88  KSLEVSEEKANQREEEYKNQIKTLTTRLKEATKREETYETHLKLLDAQLKEAMASREHVE 147
           + L + +     R  + +  +KT      +  K +E YET     DA   +A+ + +H+ 
Sbjct: 502 EGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHI- 560

Query: 148 DKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQ 196
                   ++             + +  K + RL++D  A R   K L+
Sbjct: 561 -------TRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR 602


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 88  KSLEVSEEKANQREEEYKNQIKTLTTRLKEATKREETYETHLKLLDAQLKEAMASREHVE 147
           + L + +     R  + +  +KT      +  K +E YET     DA   +A+ + +H+ 
Sbjct: 502 EGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHI- 560

Query: 148 DKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQ 196
                   ++             + +  K + RL++D  A R   K L+
Sbjct: 561 -------TRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR 602


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.128    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,955
Number of Sequences: 317
Number of extensions: 1390
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 257
length of database: 114,650
effective HSP length: 55
effective length of query: 202
effective length of database: 97,215
effective search space: 19637430
effective search space used: 19637430
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)