GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001584-TA|BGIBMGA001584-PA|IPR000533|Tropomyosin
         (136 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   0.74 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.1  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 0.74
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 86  QAADESERIRKALENRTNMEDDRVAILEAQLSQA 119
           QA   +  +++A+  + +  D+R+A ++AQL  A
Sbjct: 54  QAPKLNAEVKRAITQQHSERDERLAHVQAQLGAA 87


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 35  YHKRLQVEIMRREEAESEVAALNRR 59
           YH++      RRE + SE ++++ R
Sbjct: 792 YHQQQSHHYGRRERSGSESSSISER 816


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.121    0.294 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,758
Number of Sequences: 317
Number of extensions: 282
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 136
length of database: 114,650
effective HSP length: 51
effective length of query: 85
effective length of database: 98,483
effective search space:  8371055
effective search space used:  8371055
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)