GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001584-TA|BGIBMGA001584-PA|IPR000533|Tropomyosin
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   0.77 
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   1.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   1.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   3.1  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   4.1  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    24   7.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    24   9.5  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    24   9.5  

>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 76  TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAK 120
           T +A +    Q  D   R    L N+ +  +D++A+LE++L + +
Sbjct: 479 TGSAIVDVIKQQRDRFRRANVTLVNQVSAANDKIALLESKLEEVE 523


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 81  LSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKLIAEESDKK 129
           LSE   AA    R  + LEN T +E    ++  A L+   SQ K  A+ES  K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 86  QAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVI 134
           Q  +  +++ ++ E    +ED+R  +LE +LSQ K    E    Y+ V+
Sbjct: 65  QLRNSEKKLLQSNERYDLLEDER-KLLENELSQIKEYLREKSSSYDTVL 112


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 82  SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDK 128
           ++ S  ADESE  +K   +R      + A+LE   + A+L  E + K
Sbjct: 182 ADDSDLADESELSKKYTSDRKIRNASKKALLELHRNTARLTRETALK 228


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 107 DRVAILEAQLSQAKLIAEESDKKYEEV 133
           +++  L +Q+ + KL   E++KKY+E+
Sbjct: 587 EKINELNSQIDELKLKLNEANKKYQEL 613


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 94  IRKALENRTNMEDDRVAILEAQLSQAKLIAEESDK-KYE 131
           ++  +E+RTN+       +E + SQ +L+ E+ D  KY+
Sbjct: 322 MKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQ 360


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 85   SQAADESE----RIRKALENRTNMEDDRVAILEAQLSQAKLIAEE 125
            S   DES+     +R+AL+++TN  D    ILE    + K + ++
Sbjct: 1027 SNVTDESQLMLKTLREALQSKTNNIDHLSTILERNRKEYKSLLDD 1071


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 84  ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLI 122
           ASQ  D ++R ++  + +   E  R  +LE Q + A +I
Sbjct: 44  ASQNNDSAKREKRKKQRQKQKERKRAKLLELQDTNASII 82


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.121    0.294 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 341,892
Number of Sequences: 5004
Number of extensions: 7935
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 9
length of query: 136
length of database: 2,362,478
effective HSP length: 66
effective length of query: 70
effective length of database: 2,032,214
effective search space: 142254980
effective search space used: 142254980
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)