Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001584-TA|BGIBMGA001584-PA|IPR000533|Tropomyosin
(136 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 31 0.32
07_03_1791 - 29552218-29552427,29552858-29553358,29560369-295604... 31 0.43
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 30 0.56
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 30 0.56
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 30 0.75
08_02_1275 - 25792148-25792227,25792457-25792488,25792590-257926... 29 1.3
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 28 2.3
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 2.3
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 28 3.0
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 3.0
02_01_0264 - 1748883-1748888,1748943-1749017,1749453-1749868,175... 28 3.0
03_01_0076 - 625609-625809,625919-626000,626303-626390,626496-62... 27 4.0
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 27 5.3
10_01_0115 - 1426573-1426590,1426838-1426912,1427106-1427464,142... 27 6.9
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 27 6.9
02_03_0040 + 14262137-14262182,14262456-14262738,14262824-142629... 27 6.9
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701... 26 9.2
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198... 26 9.2
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 26 9.2
>04_04_1212 -
31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 31.1 bits (67), Expect = 0.32
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 87 AADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVI 134
AA+E+ER R+A E R E++R A +EA +QAK E + K + ++
Sbjct: 440 AAEEAERKRQAEEER-RKEEERAA-MEADRAQAKAEVEMNKNKLQNLL 485
>07_03_1791 -
29552218-29552427,29552858-29553358,29560369-29560449,
29563783-29564015,29564976-29565042
Length = 363
Score = 30.7 bits (66), Expect = 0.43
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 79 AKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVIA 135
A+ E +Q A E ER KALE R + D R + L A + AE S + EE A
Sbjct: 134 ARSQEQAQRAQELERRAKALEERARLLDQRESTL-ASHERTAAEAEASLRLCEEAAA 189
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 30.3 bits (65), Expect = 0.56
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 38 RLQVEIMR--REEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIR 95
++Q+E + R+ ESE+ + ++ TA L E + A+++ R
Sbjct: 657 KMQLEAVEGIRKMLESELESSHQETMKLQEKISLLEVRLKDQTALLVEFTAKAEDAAVGR 716
Query: 96 KALENR---TNME----DDRVAILEAQLSQAKLIAEESDKKYEEVIA 135
KA+E + +E +RV++L+ ++ Q KL++EE + K ++ A
Sbjct: 717 KAMEGQLEGAKLEITKLTNRVSLLQGKIEQEKLLSEEYEAKCRKLEA 763
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 77 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVIA 135
A A++S + + S + +L+++ N DD + QL QA+ EE ++K + +A
Sbjct: 123 AEAEVSTLKRLLEASTQKNASLDDQVNHLDDALKECVRQLRQAR---EEQEEKIRDAVA 178
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 30.3 bits (65), Expect = 0.56
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 86 QAADESERIRK--ALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVIA 135
Q ADES+ + +LE+R N+ + R++ + Q A+ A E +KYE ++
Sbjct: 601 QKADESKLKSQIASLESRVNISEGRLSAVREQAESAQEEASEWKRKYEVAVS 652
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 95 RKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVI 134
R +L + + DD++A+L QL ++ E ++YEE I
Sbjct: 506 RNSLRLKCSSNDDKLALLRKQLEASEGHRAEYLRRYEESI 545
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 29.9 bits (64), Expect = 0.75
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 37 KRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRK 96
K+L+ + V LNR ++ A L EA+++ DE R
Sbjct: 614 KKLESTSQELVDERKTVTTLNRELEALVKQLQMDSEARKALEADLDEATKSLDEMNRSAL 673
Query: 97 ALENRTNMEDDRVAILEAQLSQ-AKLIAEE 125
+L + R LEA+ +K +AE+
Sbjct: 674 SLSKELEETNSRKDTLEAEKKMLSKALAEQ 703
>08_02_1275 -
25792148-25792227,25792457-25792488,25792590-25792651,
25792721-25792801,25793086-25793241,25793292-25793348,
25793349-25793510,25793586-25793648,25793742-25793804,
25793895-25793948,25794334-25794390,25794479-25794547,
25795053-25795166,25795245-25795316,25795406-25795527,
25796416-25796617
Length = 481
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 37 KRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRK 96
K ++ + + +SE+ +L + A K + + E++ ++K
Sbjct: 88 KLIEEKSQKIASLQSEITSLQAKGSVAAEEQAGKANARAVELEKQIDKLKKDVEAQSVKK 147
Query: 97 A-LENRTNMEDDRVAILEAQLSQAKLIAEESDKKYE 131
A LENR N + RV L A++ + +E +K +
Sbjct: 148 ATLENRANDAEKRVQELNAKIDALQKTNDEQKRKLQ 183
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 80 KLSEASQAADESERIRKALENRTNME---DDRVAILEAQLSQAKLIAEESDKKYE 131
K EA+ A E ++RK L+ + + D+ +A+L++QL Q L A+E+ + +
Sbjct: 538 KKMEAAATA-EVVKLRKMLDTEASQKEKLDEEIAVLKSQLLQLSLDADETRRSLD 591
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 2.3
Identities = 22/93 (23%), Positives = 38/93 (40%)
Query: 37 KRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRK 96
+++ E R +AESE+ +L I +T +LS ++ K
Sbjct: 435 EQISSESQRANKAESEIHSLKDTISCLISEKDTTLLQYNESTRRLSVLECEISKAHMELK 494
Query: 97 ALENRTNMEDDRVAILEAQLSQAKLIAEESDKK 129
L + ME D++ E+Q S + E D+K
Sbjct: 495 KLSDDMAMEVDKLKCAESQNSAMQSELETLDQK 527
Score = 28.3 bits (60), Expect = 2.3
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 11 LDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXX 70
L+ L +K+R +H LQ E+ +R++AE + +L ++
Sbjct: 521 LETLDQKVRVQEQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEINRL 580
Query: 71 XXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKY 130
A +L++ + E L+ + ++ IL +L Q + EE+D +
Sbjct: 581 TLDMEMANDRLNDFNLVRLNLENTVCELKKEVTSLEVKIQILVQELEQKR---EEADVMH 637
Query: 131 EEV 133
++
Sbjct: 638 AQL 640
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 75 ATATAKLSEASQAADESERIRKALENRTNMEDDRVA-ILEAQLSQAKLIAEESDKKYEEV 133
A A+ E AA+E+ER+R + + R+A + + + +++ E S+ ++++V
Sbjct: 98 AAREAEARERDLAAEEAERLRGVVRRQRKELRARIAEVAREEAERKRVLGERSNARHKQV 157
Query: 134 I 134
+
Sbjct: 158 M 158
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/86 (19%), Positives = 33/86 (38%)
Query: 47 EEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMED 106
E A ++ L +Q A A++ A + + E++ EN+
Sbjct: 443 ENASQKILELEALLQTLHATEEALKLQLEEAEARVEVAEKKGSDLEQLLGESENKLVASS 502
Query: 107 DRVAILEAQLSQAKLIAEESDKKYEE 132
+ +LE ++ Q + E +K EE
Sbjct: 503 GELKLLEERVQQEAASSAEKEKLLEE 528
>02_01_0264 -
1748883-1748888,1748943-1749017,1749453-1749868,
1750095-1750215,1750423-1750533,1750636-1750737,
1750896-1750989,1751145-1751194,1751323-1751424,
1751794-1751871,1751999-1752028,1752322-1753050
Length = 637
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 108 RVAILEAQLSQAKLIAEESDKKYEEVIAY 136
RV LE +L K + E S + EEV+AY
Sbjct: 598 RVEALETELESTKKLLETSSGQQEEVLAY 626
>03_01_0076 -
625609-625809,625919-626000,626303-626390,626496-626528,
627446-627569
Length = 175
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 83 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEE 132
E S+ A R K L T+ E+ + A +EA+L + + E+ YEE
Sbjct: 72 EESEKARAENRAAKKLSYITSWENAKKAEMEAELKRIEQELEKKKAAYEE 121
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 77 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEE 132
A KL E A E IRK +E+R N ED + I K + +E D + ++
Sbjct: 154 AELKLLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQLFDEVDAQLQK 209
>10_01_0115 -
1426573-1426590,1426838-1426912,1427106-1427464,
1427551-1427656,1428091-1428207,1428319-1428420,
1428520-1428613,1428697-1428746,1429029-1429106,
1429189-1429455,1429573-1429672,1429757-1430039,
1430312-1430357
Length = 564
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 84 ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVIAY 136
A AD+ E ++ A+ RV+ LE +L+ K +E+ ++ EE++AY
Sbjct: 505 AEMPADKEEMLKTAVS--------RVSALEEELAATKKALQETLERQEEIMAY 549
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 26.6 bits (56), Expect = 6.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 100 NRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEV 133
+ T+ + +R ++E + + K EE++K+Y E+
Sbjct: 217 SETDFQKERQKVIEEEEKKLKAAIEEAEKQYSEI 250
>02_03_0040 +
14262137-14262182,14262456-14262738,14262824-14262923,
14263027-14263293,14263378-14263455,14263552-14263653,
14263731-14263780,14263864-14263957,14264060-14264161,
14264855-14264960,14265056-14265414,14265572-14265646,
14265890-14265907
Length = 559
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 84 ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVIAY 136
A AD+ E ++ A+ RV+ LE +L+ K +E+ ++ EE++AY
Sbjct: 500 AEMPADKEEMLKTAVS--------RVSALEEELAATKKALQETLERQEEIMAY 544
>11_06_0247 -
21669299-21669348,21669673-21670012,21670110-21670199,
21670280-21670339,21670564-21670856,21671176-21671245,
21671623-21671970,21673188-21673318,21673418-21673901,
21674839-21675558
Length = 861
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 41 VEIMRREEAESEVAALNRRIQ 61
+EI RRE +A LNRR++
Sbjct: 676 IEIQRREALSHHIATLNRRVK 696
>05_05_0236 -
23517512-23517682,23519436-23519516,23519685-23519891,
23519987-23520164,23520250-23520284,23520725-23520826,
23520908-23520964,23521236-23521325
Length = 306
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 82 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQA 119
S A+ AA E ER ++ LEN ++ED + + L +A
Sbjct: 7 SAAAGAAYEEERRKRVLENLKHLEDLGIKKMSKSLLEA 44
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 77 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEE 132
A K +E + +E R RKA E R E+D + E ++ Q + ++ KK ++
Sbjct: 181 AKRKEAEELRKREEELRKRKAEEERLQREEDERMVEEMKMQQKERDKGKTMKKRQD 236
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.121 0.294
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,730
Number of Sequences: 37544
Number of extensions: 45395
Number of successful extensions: 205
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 25
length of query: 136
length of database: 14,793,348
effective HSP length: 75
effective length of query: 61
effective length of database: 11,977,548
effective search space: 730630428
effective search space used: 730630428
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)
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