GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001584-TA|BGIBMGA001584-PA|IPR000533|Tropomyosin
         (136 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   0.89 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.2  
AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative 5'-nucleo...    22   6.3  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    22   8.3  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 18/93 (19%), Positives = 38/93 (40%)

Query: 37  KRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRK 96
           + +Q +I   +E + E+ A  +R+                  A L++      E    + 
Sbjct: 780 QEIQTQINYLQEQQGELEATIQRLTAKLKQQEMELKRMHMDVASLTQQMPRLKEQVDWQA 839

Query: 97  ALENRTNMEDDRVAILEAQLSQAKLIAEESDKK 129
               RT+ + ++V  LEA++++ K   + S  K
Sbjct: 840 ERVARTHSDPEKVRALEAKVAECKQAFDSSSTK 872


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 77  ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVIA 135
           A  + + AS+  D  E+  +  E R N  +    +LE     AK      +KK  EV A
Sbjct: 718 ALERYAAASREHDLLEQRIRLFEERNNDREANFRLLEDAYQSAKKTLANVEKKLAEVKA 776


>AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative
           5'-nucleotidase protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 106 DDRVAILEAQLSQAKLIAEESDKKYEEV 133
           DD      AQ+S   ++A+ S K YE V
Sbjct: 446 DDEFRYNTAQVSGMTVVADLSKKPYERV 473


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/71 (15%), Positives = 27/71 (38%)

Query: 48  EAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDD 107
           E E+E   L   ++                 AKL +  +   + E+  +A ++     + 
Sbjct: 776 EGETEETTLREELEHSRTILAKLQKGIEEEQAKLDQVRRTVQQEEQTAQAKKDAMGAVEA 835

Query: 108 RVAILEAQLSQ 118
            +A ++A + +
Sbjct: 836 EIARIQASIDK 846


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.309    0.121    0.294 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,656
Number of Sequences: 2123
Number of extensions: 1502
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 136
length of database: 516,269
effective HSP length: 58
effective length of query: 78
effective length of database: 393,135
effective search space: 30664530
effective search space used: 30664530
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)