Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001584-TA|BGIBMGA001584-PA|IPR000533|Tropomyosin
(136 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 35 0.022
At3g02930.1 68416.m00288 expressed protein ; expression support... 32 0.16
At1g17820.1 68414.m02206 expressed protein 30 0.48
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont... 29 0.83
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 29 0.83
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 1.9
At4g25950.1 68417.m03733 vacuolar ATP synthase, putative / V-ATP... 28 1.9
At4g40020.1 68417.m05666 hypothetical protein 28 2.5
At4g36120.1 68417.m05141 expressed protein 27 3.3
At4g27980.1 68417.m04014 expressed protein 27 3.3
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 27 3.3
At2g16380.1 68415.m01874 SEC14 cytosolic factor family protein /... 27 3.3
At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family pr... 27 3.3
At2g34730.1 68415.m04265 myosin heavy chain-related low similari... 27 4.4
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 27 4.4
At4g34580.1 68417.m04913 SEC14 cytosolic factor, putative / phos... 27 5.9
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof... 27 5.9
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 27 5.9
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 26 7.7
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 26 7.7
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 34.7 bits (76), Expect = 0.022
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 45 RREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKALE---NR 101
+ +E + A+NR+I+ + A K+ E + D+S+ RK LE +R
Sbjct: 44 QNQELARDNDAINRKIESLTAEIEELRGAESKAKRKMGEMEREIDKSDEERKVLEAIASR 103
Query: 102 TNMEDDRVAILEAQLSQAKLIAEESDKKYEEV 133
+ + VA L+ +L A+ EE+ + E++
Sbjct: 104 ASELETEVARLQHELITARTEGEEATAEAEKL 135
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 31.9 bits (69), Expect = 0.16
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 14 LKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXX 73
L+K++ + K+L+V R + ESE+ L +I+
Sbjct: 318 LEKRLEEANKLEKCASVSLVSVTKQLEVSNSRLHDMESEITDLKEKIELLEMTVASQKVD 377
Query: 74 XATATAKLSEASQAADESERIRKALEN--RTNMEDDRVAILEAQ--LSQAKLIAEESDKK 129
+ KL A + + +SE+ + L+N T E+ A+ + Q S + + EE K
Sbjct: 378 LEKSEQKLGIAEEESSKSEKEAEKLKNELETVNEEKTQALKKEQDATSSVQRLLEEKKKI 437
Query: 130 YEEV 133
E+
Sbjct: 438 LSEL 441
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 30.3 bits (65), Expect = 0.48
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 84 ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEV 133
AS + +SE+++KA + AI+ LS + + E+DK EE+
Sbjct: 668 ASSSCAQSEQVQKAATAFQKQNTEAEAIMSTPLSNSTTVTIENDKSLEEL 717
>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
contains weak similarity to cytoplasmic linker protein
CLIP-170 (GI:2905649) [Gallus gallus]
Length = 588
Score = 29.5 bits (63), Expect = 0.83
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 39 LQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKAL 98
L++ + E + S ++A NR + + + K + E E + L
Sbjct: 49 LKIAALEPESSSSPISATNRTPKDKSPNVLNRRSPRSPVSEK--KRPSRITELELLVSQL 106
Query: 99 ENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEV 133
+ D++++ E QA+ AEES K+ +EV
Sbjct: 107 QEELKKAKDQISVSETSKKQAEQEAEESRKQLQEV 141
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 29.5 bits (63), Expect = 0.83
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 76 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEE 132
T ++L EA A +E +++ R + R+ +LEAQLS + + K E+
Sbjct: 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 703
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 80 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLS---QAKLIAEESDKKYEE 132
KL+E + +E RI++A N +RVA+ +A+ +A L EE ++K +E
Sbjct: 624 KLNEPLKRMEEETRIKEARLREENDRRERVAVEKAENEKRLKAALEQEEKERKIKE 679
>At4g25950.1 68417.m03733 vacuolar ATP synthase, putative /
V-ATPase, putative / vacuolar proton pump, putative
similar to Swiss-Prot:O82629 vacuolar ATP synthase
subunit G 2 (V-ATPase G subunit 2, Vacuolar proton pump
G subunit 2) [Arabidopsis thaliana]
Length = 108
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 75 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESD 127
A TAKL+ QA DE+E+ + +R E Q + AK + +E+D
Sbjct: 26 AARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQVSGTDQEADAKRLDDETD 78
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 80 KLSEASQAADESERIRKAL-ENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEE 132
K++EA A D ++++K L E ME+++ L Q S K + E +KK EE
Sbjct: 348 KVNEAV-ANDNIKKLKKMLSEIEVAMEEEKQRSLNRQESMPKEVVEVVEKKIEE 400
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 86 QAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEV 133
+A D+ K + + +++ I+E +L A++ +++ KYEEV
Sbjct: 177 KAMDDLALALKEVATDCSQTKEKLVIVETELEAARIESQQWKDKYEEV 224
>At4g36120.1 68417.m05141 expressed protein
Length = 981
Score = 27.5 bits (58), Expect = 3.3
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 77 ATAKLSEASQAADESERIRKALENRTNME---DDRVAILEAQLS----QAKLIAEESDKK 129
A +S +A E+ +++ LE+ T ++ +DR + L+ L Q +++ EESDKK
Sbjct: 103 AEEAVSGWEKADAETLALKRQLESVTLLKLTAEDRASHLDDALKECTRQIRIVKEESDKK 162
Query: 130 YEEVI 134
++VI
Sbjct: 163 LQDVI 167
>At4g27980.1 68417.m04014 expressed protein
Length = 565
Score = 27.5 bits (58), Expect = 3.3
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 35 YHKRLQVEIMRR-EEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSE-ASQAADESE 92
+H + + E RR EE+E+ L + T K+ E A + +E+E
Sbjct: 161 FHLKQRAETERRNEESEAREKDLRALEEAVKEKTAELKRKEETLELKMKEEAEKLREETE 220
Query: 93 RIRKALENRTNMEDDRVAILE------AQLSQAKLIAEESDKK 129
+RK LE + + R+ LE + S+ +L+ ES K+
Sbjct: 221 LMRKGLEIKEKTLEKRLKELELKQMELEETSRPQLVEAESRKR 263
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 83 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVIA 135
+A+ +E ++ L ++ + V L+ QLS+ + E+++ K EE+ A
Sbjct: 397 DAATTGEEMSKMESLLLDKNRKMEHEVTQLKVQLSEKASLLEKAEAKGEELTA 449
>At2g16380.1 68415.m01874 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to phosphatidylinositol
transfer-like protein III (GI:14486705) [Lotus
japonicus]
Length = 547
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 79 AKLSEASQAADESERIRKALENRTNMED--DRVAILEAQLSQAKLIAEESDKKYEEVIAY 136
A+L E ++ D S+ +ALE ++ +RV +LE +LS+ K +E+ + ++AY
Sbjct: 475 AELEEKYKSLD-SKSADEALEKDDKLQAALNRVQVLEHELSETKKALDETMVNQQGILAY 533
>At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family
protein / kinesin motor family protein
Length = 919
Score = 27.5 bits (58), Expect = 3.3
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 36 HKRLQVEIMRREEAESEVAALNRR-IQXXXXXXXXXXXXXATATAKLSEASQAADESERI 94
HK L+ E ++E+ E E+A L+ + +Q + K S A + R+
Sbjct: 580 HKMLENETQQKEKLEGEIATLHSQLLQLSLTADETRRNLEQHGSEKTSGARDSLMSQLRL 639
Query: 95 RKALENRTNMEDDRVAILEAQLSQAKLI----AEESDKKYEEV 133
+ +++ N E VA L Q+ K++ AE++D + V
Sbjct: 640 PQ-IQDPGNAEKPPVARLFEQVGLQKILSLLEAEDADVRIHAV 681
>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
to SP|P14105 Myosin heavy chain, nonmuscle (Cellular
myosin heavy chain) {Gallus gallus}
Length = 825
Score = 27.1 bits (57), Expect = 4.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 54 AALNRRIQXXXXXXXXXXXXXATATAKLSEASQA-ADESERIRKALENRTNMEDDR 108
A L R++ + A K+S+ SQA AD E IRK LE T++ED R
Sbjct: 413 AGLKRQLDSLLLENRQLKDSLSDAAEKMSQLSQAEADHQELIRK-LE--TDVEDSR 465
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 82 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEE--SDKKYEE 132
SE + + D SE++ EN E++ + + Q QA + A+E SD+ YE+
Sbjct: 130 SEDNHSNDRSEKLDSENENDNENEEEDNEMNKHQSGQADVPADEMLSDEYYEQ 182
>At4g34580.1 68417.m04913 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein III
(GI:14486705) [Lotus japonicus]; similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; similar SEC14 protein,
Saccharomyces cerevisiae, PIR2:A30106; contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus
Length = 560
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 107 DRVAILEAQLSQAKLIAEESDKKYEEVIAY 136
+RV +LE +L++ K EE+ +E++AY
Sbjct: 510 NRVQVLEQELTETKKALEEALVSQKEILAY 539
>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 734
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 93 RIRKALENRTNMEDDRVAIL-EAQLSQAKLIAEESDKKYEE 132
R+R + + ED+RV I+ EA +++ ++ AEE+ K+E+
Sbjct: 3 RVRLVTPSSSESEDERVTIIREADMNREEVAAEEN--KFED 41
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 80 KLSEASQAADESERIRKALENRTNM--EDDRVAILEAQLSQAKLIAEESDKKYEEV 133
K SE ++ + K + R + ++R +LEAQ+S+ +L ++ KK EE+
Sbjct: 417 KESEKEKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEEL 472
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 26.2 bits (55), Expect = 7.7
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 43 IMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKALENRT 102
++ RE+ ++V L RR+ A+ A+L+ Q A + A +
Sbjct: 128 VVLREDLSAQVRTLKRRVNQAEEEQYRAEEDAASLRAELNSIQQQAMGNS---FAGMSPM 184
Query: 103 NMEDDRVAILEAQLSQAKL-IAEESDKKYEE 132
+ D++ ILE +++ KL + +ES + +E
Sbjct: 185 GVSPDQLPILEKEMANLKLELQKESVLRQQE 215
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 26.2 bits (55), Expect = 7.7
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 43 IMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKALENRT 102
++ RE+ ++V L RR+ A+ A+L+ Q A + A +
Sbjct: 128 VVLREDLSAQVRTLKRRVNQAEEEQYRAEEDAASLRAELNSIQQQAMGNS---FAGMSPM 184
Query: 103 NMEDDRVAILEAQLSQAKL-IAEESDKKYEE 132
+ D++ ILE +++ KL + +ES + +E
Sbjct: 185 GVSPDQLPILEKEMANLKLELQKESVLRQQE 215
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.121 0.294
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,571
Number of Sequences: 28952
Number of extensions: 41069
Number of successful extensions: 219
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 24
length of query: 136
length of database: 12,070,560
effective HSP length: 74
effective length of query: 62
effective length of database: 9,928,112
effective search space: 615542944
effective search space used: 615542944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)
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