GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001583-TA|BGIBMGA001583-PA|undefined
         (244 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   0.53 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.2  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 54  HHPRLRGDRQPAPATNPDPEPS 75
           H P  +   +PAPA+   PEP+
Sbjct: 250 HQPATKSKPRPAPASRNAPEPA 271



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 63  QPAPATNPDPEPSARTTLTQTDD 85
           QPA  + P P P++R      D+
Sbjct: 251 QPATKSKPRPAPASRNAPEPADN 273


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 64  PAPATNPDPEPSARTTLTQTD-DVVPCVNSVSESQDVTRT 102
           P P   P+P+P+  T    T     P  +S ++    T+T
Sbjct: 393 PEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKT 432


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,847
Number of Sequences: 317
Number of extensions: 1495
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 244
length of database: 114,650
effective HSP length: 55
effective length of query: 189
effective length of database: 97,215
effective search space: 18373635
effective search space used: 18373635
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)