GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001583-TA|BGIBMGA001583-PA|undefined
         (244 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.12 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   3.3  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   3.3  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   4.4  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   4.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   5.8  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   7.6  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 68  TNPDPEPSART-TLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQ 124
           ++ D +PSA + TL    D++   +S+  SQ+ T + SD+   N N+  AE  + DEQ
Sbjct: 365 SDEDDQPSADSPTLMHPSDLI---SSLVNSQNQTTSVSDNTGPNENVNEAEHISEDEQ 419


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 67  ATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALS-NSNLTVAEDCANDEQE 125
           A+N  P P   T    +  + P  N  S S D   TN DD  S NS     +  A  E  
Sbjct: 461 ASNDLPSPVVPTRSNSSSILQPSYNLNSHSSDRRNTNDDDQSSLNSQQLSNQAKAQGEVS 520

Query: 126 NELDRVKSTXXXXXXXXXXXXXXRSAGDGAEAIVAALPSDISD 168
             L  V S+               +  + A   + ++ S++S+
Sbjct: 521 PTLSFVPSSHSMEQGNGSVASANNAQSEAATRSINSI-SEVSE 562


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 67   ATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSN 112
            +T    +P  R T   T DV P  + V+++  ++ T  D+A  NS+
Sbjct: 1089 STKRKRQPIRRVTTNLTSDV-PSGSEVADTNSLSSTTKDEASPNSD 1133


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 90  VNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQENELD 129
           +N+++  +DV   NS+D   N+   +  D  N EQ +EL+
Sbjct: 28  INAINTYEDVA--NSEDEFYNAQDKILFDADNGEQADELE 65


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 153 DGAEAIVAALPSDISDDDPETVELAKLRCTSE 184
           DGAE ++    ++   +  E  E+ K +CT E
Sbjct: 55  DGAETLLQVFDTNFKKETKERKEMLKKKCTDE 86


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 70  PDPEPSARTTLT-QTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQENEL 128
           P   P++    + Q D   P +NSV  + ++    S+D LS      +   + +E+E  L
Sbjct: 285 PSSSPNSDDAYSPQVDSYSPSINSVPYTSNIVENPSEDNLSPLPPPASGPYSQEEEETSL 344


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 60  GDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDC 119
           G+R   P+   D EP ++  L +T ++ P  +   E + V   N  + L     + ++D 
Sbjct: 166 GERSGFPSEGLDNEPESQRDLDETGNLAP-EDLKDEVKSVHEFNEPNDLRQQEESYSDD- 223

Query: 120 ANDEQENELDRV 131
            +D   NE + V
Sbjct: 224 -DDTNVNEFEDV 234


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 77  RTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLT 114
           R+++ +T D+   +  +  SQ V  + S+ +++ +NLT
Sbjct: 680 RSSIFETSDIDDRLTVIDRSQSVVPSESEFSIAGANLT 717


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,990
Number of Sequences: 5004
Number of extensions: 29004
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 9
length of query: 244
length of database: 2,362,478
effective HSP length: 71
effective length of query: 173
effective length of database: 2,007,194
effective search space: 347244562
effective search space used: 347244562
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)