Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001583-TA|BGIBMGA001583-PA|undefined
(244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 34 0.12
01_06_1214 + 35470688-35471340,35471617-35471701,35471750-354719... 33 0.16
07_03_0808 - 21668100-21669092 32 0.49
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 32 0.49
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 30 1.5
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 29 2.6
09_04_0434 - 17533633-17534637 29 2.6
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 29 2.6
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 29 2.6
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 29 3.4
04_04_1067 - 30545277-30545595,30545693-30545801,30545841-305459... 29 3.4
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 4.6
09_01_0007 + 212984-213949 28 6.0
09_01_0006 - 206409-207464 28 8.0
01_06_1327 + 36337578-36337976,36338068-36338397,36338523-363386... 28 8.0
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 62 RQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSES---QDVTRTNSDDALSNSNLTVAED 118
++ A PD +R L+QT++++ + +S S QD DD + + E
Sbjct: 464 KEEVQAPFPDVSKVSRDVLSQTENILGALMLLSRSLSPQDKESVMVDDGSNKEDSVKEEQ 523
Query: 119 CANDEQENELDRVKS 133
CA+D +N+ D V +
Sbjct: 524 CASDYTDNDDDAVST 538
>01_06_1214 +
35470688-35471340,35471617-35471701,35471750-35471906,
35472086-35472189
Length = 332
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 43 GRTPVRRRGHQHHP-RLRGDRQPAPATNPDPEPSARTTLTQTDDVVP 88
G P+ R H HHP RL P P P+P RT+ D P
Sbjct: 18 GLNPIHGRRHGHHPSRLLASSAPPPPPPRPPKPEPRTSHENLGDDTP 64
>07_03_0808 - 21668100-21669092
Length = 330
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 44 RTPVRRRGHQHHPRLRG-DRQPAPATNPDPEPSA 76
R P R RGHQH P LR AP P P SA
Sbjct: 140 RRPRRARGHQHQPALRHLPPSTAPRRTPPPPGSA 173
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 64 PAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDE 123
P A P + T + D+ + + +E ++DD N N+ V D A DE
Sbjct: 9 PRGAAKLVPVEAEPPTQEEIDEAIKAIAQHTEGGSDADEDADDGEENGNMEV--DAAADE 66
Query: 124 QENELDRV 131
+E E+D V
Sbjct: 67 EEEEVDEV 74
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 45 TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNS 104
TP R R PR R R A P P P R D P + + +E+ RTN
Sbjct: 12 TPRRHRHGPATPRRRRRRHAAAVATPPPPPPRRRANRCPDAATPPLTNENEND---RTNE 68
Query: 105 DDALSNSNLTVAEDCANDEQENELDRV 131
+ N +E+ + EN+ V
Sbjct: 69 SEN-ENDRTKTSENEGTNVNENKRTNV 94
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 52 HQHHPRLRGDRQPAPATNPDPEPSARTTLT-QTDDVVPCVNSVSESQDVTR 101
H HH L A A P P P A T LT Q ++ VP + V + DV R
Sbjct: 17 HHHHAHLPALPHLA-APPPPPPPPAETELTEQREEEVPVDDVVEAAADVPR 66
>09_04_0434 - 17533633-17534637
Length = 334
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 50 RGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPC 89
RGHQH P ++P P P SA ++ V PC
Sbjct: 267 RGHQHKPE---PQEPRQLRRPPPHLSAAAAVSAAQPVEPC 303
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 57 RLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSD----DALSNSN 112
R R + P P PEP A + + DD +P + D D + S
Sbjct: 36 RFRPRAKGKPKPKPKPEPKAEDSKLKADDSIPMSKPEEPKPEAAAPMEDSMEVDGVGPSA 95
Query: 113 LTVAEDCANDEQENELDRV 131
AE +E E+E D V
Sbjct: 96 SASAEGVGAEEVEDEEDYV 114
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 57 RLRGDRQPAPATNPDPEPSARTTLTQTD 84
R R + P P T+ DP+PS T TQ D
Sbjct: 103 RYRDRKPPPPPTHRDPKPSLPPTTTQRD 130
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 51 GHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSN 110
G + +L GD + D + S + + DD + + + E DV+ ++ D+ LS
Sbjct: 530 GMKEEDQLSGDEDDTEELDEDQDISDNDS-EENDDELELDSDMDEENDVSESDDDEELSE 588
Query: 111 SNLTVAEDCANDEQENELDRVKST 134
E D+ ++ D+ K++
Sbjct: 589 KLDDSDEGSDQDDDSDQDDKSKNS 612
>04_04_1067 -
30545277-30545595,30545693-30545801,30545841-30545970,
30546738-30546904,30546981-30546993
Length = 245
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 41 VHGRTPVRRRGHQHHPR-LRG-DRQPAPATNPDPEPSARTTLTQTDDVVPCV 90
+ GR P R G + PR ++G R PA NP EP R L Q D +P +
Sbjct: 22 IWGRRP-RPNGGRRRPRPIQGLFRVSHPAVNPTAEPIRRQFLEQLDYPLPTI 72
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 86 VVPCVNSVSESQDVTRTNSDDALSNS 111
V PC++ +SE+ DV R + D+L NS
Sbjct: 543 VHPCLSEISEANDVDRDDRVDSLVNS 568
>09_01_0007 + 212984-213949
Length = 321
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 40 HVHGRTPVRRRGHQHHPRLRG-DRQPAPATNPDPEPSARTTLTQTDDVV--PCVNSVSES 96
H++ P RRR HQHH L R+ P P+ A + D P V S +S
Sbjct: 89 HIYKPPPARRRPHQHHTTLFDLSRKVWPQFQHPPQAQAVHISSHGADSASGPIVISSDDS 148
Query: 97 Q-DVTRTNSDDALSNSNLTVAEDCAN 121
+ +++D A ++S+ V +N
Sbjct: 149 SGHIVISSNDGAGADSDAMVVSLSSN 174
>09_01_0006 - 206409-207464
Length = 351
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 40 HVHGRTPVRRRGHQHHPRL 58
H++ P RRR HQHH L
Sbjct: 89 HIYKPPPARRRPHQHHTTL 107
>01_06_1327 +
36337578-36337976,36338068-36338397,36338523-36338628,
36338722-36339104
Length = 405
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 64 PAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCAND 122
PAPA P PS+ + V +S+++ + SD A+ + L +A A++
Sbjct: 335 PAPAARPSGVPSSAEAAETENGGAASVKGISKAESSDKACSDAAMLLTKLALARRSADN 393
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.127 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,843,855
Number of Sequences: 37544
Number of extensions: 217931
Number of successful extensions: 992
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 16
length of query: 244
length of database: 14,793,348
effective HSP length: 80
effective length of query: 164
effective length of database: 11,789,828
effective search space: 1933531792
effective search space used: 1933531792
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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