GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001583-TA|BGIBMGA001583-PA|undefined
         (244 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL136164-1|CAI20223.1|  451|Homo sapiens protein ( Human DNA seq...    32   1.6  
AK024732-1|BAB14980.1|  252|Homo sapiens protein ( Homo sapiens ...    32   1.6  
BC117310-1|AAI17311.1| 1142|Homo sapiens enamelin protein.             31   2.8  
BC117308-1|AAI17309.1| 1142|Homo sapiens enamelin protein.             31   2.8  
AY167999-1|AAN87336.1| 1142|Homo sapiens enamelin protein.             31   2.8  
AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear...    31   2.8  
AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear...    31   2.8  
AF125373-1|AAG43242.1| 1142|Homo sapiens enamelin protein.             31   3.7  
BC082270-1|AAH82270.1|  588|Homo sapiens YEATS2 protein protein.       31   4.9  
AB033023-1|BAA86511.1| 1487|Homo sapiens KIAA1197 protein protein.     31   4.9  
BC126396-1|AAI26397.1|  574|Homo sapiens forkhead box J2 protein.      30   8.5  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    30   8.5  
AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    30   8.5  
AL445648-3|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    30   8.5  
AL445648-2|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    30   8.5  
AF155133-1|AAK49016.1|  526|Homo sapiens FOXJ2 forkhead factor i...    30   8.5  
AF155132-1|AAF65927.1|  574|Homo sapiens FOXJ2 forkhead factor p...    30   8.5  

>AL136164-1|CAI20223.1|  451|Homo sapiens protein ( Human DNA
           sequence from clone RP3-331H24 on chromosome 6. ).
          Length = 451

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 62  RQPAPATN-PDPEPS---ARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAE 117
           ++P   T+ P PEPS   A+   T+ D     +NS  E    T T   +++S  N    E
Sbjct: 371 KEPVEETDRPSPEPSNEAAKPRNTEKDSNAENMNSQPEKTVTTPTEKKESVSPEN---NE 427

Query: 118 DCANDEQENE 127
           +  ND Q+NE
Sbjct: 428 EGGNDNQDNE 437


>AK024732-1|BAB14980.1|  252|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21079 fis, clone CAS02253. ).
          Length = 252

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 62  RQPAPATN-PDPEPS---ARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAE 117
           ++P   T+ P PEPS   A+   T+ D     +NS  E    T T   +++S  N    E
Sbjct: 172 KEPVEETDRPSPEPSNEAAKPRNTEKDSNAENMNSQPEKTVTTPTEKKESVSPEN---NE 228

Query: 118 DCANDEQENE 127
           +  ND Q+NE
Sbjct: 229 EGGNDNQDNE 238


>BC117310-1|AAI17311.1| 1142|Homo sapiens enamelin protein.
          Length = 1142

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 61  DRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRT-NSDDALSNSNLTVAED 118
           +  P  A +P  EP+A +T+T+T+   P         D + T NS   L+  N   A++
Sbjct: 229 EEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQN 287


>BC117308-1|AAI17309.1| 1142|Homo sapiens enamelin protein.
          Length = 1142

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 61  DRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRT-NSDDALSNSNLTVAED 118
           +  P  A +P  EP+A +T+T+T+   P         D + T NS   L+  N   A++
Sbjct: 229 EEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQN 287


>AY167999-1|AAN87336.1| 1142|Homo sapiens enamelin protein.
          Length = 1142

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 61  DRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRT-NSDDALSNSNLTVAED 118
           +  P  A +P  EP+A +T+T+T+   P         D + T NS   L+  N   A++
Sbjct: 229 EEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQN 287


>AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 45  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDV---VPCVNSVSESQDVTR 101
           +PVRR   + H R    R  + + +P PE   +T       V    P V   + + D+ +
Sbjct: 187 SPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILK 246

Query: 102 TNSDDALSNSNLTVAEDCANDEQENELDRVKS 133
               + +        E  +  EQE E  R +S
Sbjct: 247 VPKPEPIPEPKEPSPEKNSKKEQEKEKTRPRS 278


>AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 45  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDV---VPCVNSVSESQDVTR 101
           +PVRR   + H R    R  + + +P PE   +T       V    P V   + + D+ +
Sbjct: 187 SPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILK 246

Query: 102 TNSDDALSNSNLTVAEDCANDEQENELDRVKS 133
               + +        E  +  EQE E  R +S
Sbjct: 247 VPKPEPIPEPKEPSPEKNSKKEQEKEKTRPRS 278


>AF125373-1|AAG43242.1| 1142|Homo sapiens enamelin protein.
          Length = 1142

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 61  DRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRT-NSDDALSNSN 112
           +  P  A +P  EP+A +T+T+T+   P         D + T NS   L+  N
Sbjct: 229 EEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGN 281


>BC082270-1|AAH82270.1|  588|Homo sapiens YEATS2 protein protein.
          Length = 588

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 42  HGRTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTR 101
           H  TP++ +   H  R  G   P P +  +   S    LTQ D    C +S S + ++ R
Sbjct: 382 HHLTPLKTKHIAHWCRCHGYTPPDPESLRNDGDSIEDVLTQIDSEPECPSSFSSADNLCR 441

Query: 102 TNSD 105
              D
Sbjct: 442 KLED 445


>AB033023-1|BAA86511.1| 1487|Homo sapiens KIAA1197 protein protein.
          Length = 1487

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 42   HGRTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTR 101
            H  TP++ +   H  R  G   P P +  +   S    LTQ D    C +S S + ++ R
Sbjct: 1281 HHLTPLKTKHIAHWCRCHGYTPPDPESLRNDGDSIEDVLTQIDSEPECPSSFSSADNLCR 1340

Query: 102  TNSD 105
               D
Sbjct: 1341 KLED 1344


>BC126396-1|AAI26397.1|  574|Homo sapiens forkhead box J2 protein.
          Length = 574

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 52  HQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVP---C--VNSVSES-QDVTRTNSD 105
           HQHHP     +QP P   P P+   +  +  T    P   C  ++S+ ES + V R N  
Sbjct: 378 HQHHPHSHPAQQPPP---PQPQAQGQAPINNTGFAFPSDWCSNIDSLKESFKMVNRLNWS 434

Query: 106 DALSNSNLTVAEDCANDEQEN 126
               +    + E     EQ+N
Sbjct: 435 SIEQSQFSELMESLRQAEQKN 455


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 45  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDV---VPCVNSVSESQDVTR 101
           +PVRR   + H R    R  + + +P PE   +T       V    P V   + + D+ +
Sbjct: 187 SPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILK 246

Query: 102 TNSDDALSNSNLTVAEDCANDEQENELDRVKS 133
               + +        E  +  E+E E  R +S
Sbjct: 247 VPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRS 278


>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 45  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDV---VPCVNSVSESQDVTR 101
           +PVRR   + H R    R  + + +P PE   +T       V    P V   + + D+ +
Sbjct: 187 SPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILK 246

Query: 102 TNSDDALSNSNLTVAEDCANDEQENELDRVKS 133
               + +        E  +  E+E E  R +S
Sbjct: 247 VPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRS 278


>AL445648-3|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 45  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDV---VPCVNSVSESQDVTR 101
           +PVRR   + H R    R  + + +P PE   +T       V    P V   + + D+ +
Sbjct: 187 SPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILK 246

Query: 102 TNSDDALSNSNLTVAEDCANDEQENELDRVKS 133
               + +        E  +  E+E E  R +S
Sbjct: 247 VPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRS 278


>AL445648-2|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 45  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDV---VPCVNSVSESQDVTR 101
           +PVRR   + H R    R  + + +P PE   +T       V    P V   + + D+ +
Sbjct: 187 SPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILK 246

Query: 102 TNSDDALSNSNLTVAEDCANDEQENELDRVKS 133
               + +        E  +  E+E E  R +S
Sbjct: 247 VPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRS 278


>AF155133-1|AAK49016.1|  526|Homo sapiens FOXJ2 forkhead factor
           isoform FOXJ2.S protein.
          Length = 526

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 52  HQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVP---C--VNSVSES-QDVTRTNSD 105
           HQHHP     +QP P   P P+   +  +  T    P   C  ++S+ ES + V R N  
Sbjct: 378 HQHHPHSHPAQQPPP---PQPQAQGQAPINNTGFAFPSDWCSNIDSLKESFKMVNRLNWS 434

Query: 106 DALSNSNLTVAEDCANDEQEN 126
               +    + E     EQ+N
Sbjct: 435 SIEQSQFSELMESLRQAEQKN 455


>AF155132-1|AAF65927.1|  574|Homo sapiens FOXJ2 forkhead factor
           protein.
          Length = 574

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 52  HQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVP---C--VNSVSES-QDVTRTNSD 105
           HQHHP     +QP P   P P+   +  +  T    P   C  ++S+ ES + V R N  
Sbjct: 378 HQHHPHSHPAQQPPP---PQPQAQGQAPINNTGFAFPSDWCSNIDSLKESFKMVNRLNWS 434

Query: 106 DALSNSNLTVAEDCANDEQEN 126
               +    + E     EQ+N
Sbjct: 435 SIEQSQFSELMESLRQAEQKN 455


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.313    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,400,020
Number of Sequences: 224733
Number of extensions: 970246
Number of successful extensions: 3646
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3644
Number of HSP's gapped (non-prelim): 17
length of query: 244
length of database: 73,234,838
effective HSP length: 88
effective length of query: 156
effective length of database: 53,458,334
effective search space: 8339500104
effective search space used: 8339500104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)