GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001583-TA|BGIBMGA001583-PA|undefined
         (244 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.8  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 89  CVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQENELD 129
           CV +++  +  TR +++ ++  +   + +  AND  E  +D
Sbjct: 13  CVGALTIEELKTRLHTEQSVCKTETGIDQQKANDVIEGNID 53


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 209 GSSIFSSDTMMKFSIIKNELQNIKNTALKRVMSYMI 244
           G +IF    M++F+ +    +  K   LK+V S  I
Sbjct: 300 GCTIFLFAAMVEFAFVNTIYRRKKTVPLKKVNSKYI 335


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 45  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTT 79
           +P++R G        G  +    TN  P P   TT
Sbjct: 391 SPLKREGGPPTGATTGPNEIVTCTNCGPNPCTHTT 425


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,441
Number of Sequences: 429
Number of extensions: 1847
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 244
length of database: 140,377
effective HSP length: 56
effective length of query: 188
effective length of database: 116,353
effective search space: 21874364
effective search space used: 21874364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)