Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001583-TA|BGIBMGA001583-PA|undefined
(244 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51640.1 68418.m06403 leaf senescence protein-related (YLS7 )... 36 0.025
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 31 0.54
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 31 0.71
At1g63700.1 68414.m07209 protein kinase, putative contains prote... 31 0.71
At5g41140.1 68418.m05001 expressed protein 30 1.2
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 30 1.2
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu... 30 1.6
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 29 2.9
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 29 3.8
At4g25515.1 68417.m03679 transcriptional co-regulator family pro... 28 5.0
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re... 28 5.0
At2g12400.1 68415.m01339 expressed protein 28 5.0
At5g08020.1 68418.m00933 replication protein, putative similar t... 28 6.6
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 28 6.6
At5g62810.1 68418.m07884 peroxisomal protein (PEX14) identical t... 27 8.8
At5g61560.1 68418.m07725 protein kinase family protein contains ... 27 8.8
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r... 27 8.8
>At5g51640.1 68418.m06403 leaf senescence protein-related (YLS7 )
annotation temporarily based on supporting cDNA
gi|13122291|dbj|AB047810.1|; identical to cDNA YLS7
leaf-senescence-related protein GI:13122291
Length = 501
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 44 RTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTN 103
RT + HH DR P+P ++ + P LTQ D +S DV
Sbjct: 58 RTETTQNVQFHHSIHDPDRNPSPVSSSESPP----VLTQDSDDKVLPKGSHDSNDVRLGE 113
Query: 104 SDDALSNSNLTVAEDCANDEQENELD 129
++ +SN+++ E+ D E E D
Sbjct: 114 ETNSGKSSNVSIDEEATQDHVETECD 139
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 64 PAPATNPD---PEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALS 109
PAP T PD P PS+ L +D P +S+S + T N + S
Sbjct: 126 PAPTTKPDSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGAS 174
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 64 PAPATNPD---PEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSN 110
PAP T PD P PS+ L +D P +S+S + T N D +SN
Sbjct: 126 PAPTTKPDSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVN--DQVSN 173
>At1g63700.1 68414.m07209 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to MEK kinase
(MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
Length = 883
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 52 HQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVP 88
H H P + G R P+P ++P + T LT +P
Sbjct: 737 HSHSPHISGRRSPSPISSPHALSGSSTPLTGCGGAIP 773
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 103 NSDDALSNSNLTVAEDCANDEQENELDRVKS 133
++DD++++SN T+ D +NE+D++K+
Sbjct: 267 STDDSMNSSNDTIPRDTTRTSSDNEVDKLKA 297
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 42 HGRTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTR 101
H + R H PR+ + P+ + P + + +++V C NS S V +
Sbjct: 836 HEASSSRGYNHPPSPRVSKELNKTPSISGSPSATRNKSPRSSENVNSCGNSSSGGNSVVK 895
Query: 102 TNSDDAL 108
N+D ++
Sbjct: 896 RNTDTSI 902
>At1g80010.1 68414.m09362 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 696
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 40 HVHGRTPVRRRGHQHHPRLRGDRQPAPATNPDPEP 74
H H P R + H + PA TNP+P P
Sbjct: 159 HNHSFDPQRAHNSKSHKKSSSSASPATKTNPEPPP 193
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 61 DRQPAPATNPDPEPSARTTLTQTD-DVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDC 119
D+Q + E S+ L +TD DVVP + SES+ TR N+ + S+ + C
Sbjct: 1738 DKQHSRRKEQRAETSSDRKLRKTDGDVVPISSKGSESKH-TRRNAKEEASSQREKLVASC 1796
Query: 120 ANDEQENELDR 130
E L R
Sbjct: 1797 EKVTSEETLRR 1807
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 94 SESQDVTRTNSDDALSNSNLTVAEDCA-NDEQENELDRVKS 133
S S D +++DD+ ++SN VA D A N E+E++++K+
Sbjct: 255 SGSSDHGISSTDDSTNSSNDIVARDTAINSSDEDEVEKLKN 295
>At4g25515.1 68417.m03679 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 471
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/79 (25%), Positives = 30/79 (37%)
Query: 40 HVHGRTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDV 99
H HG T ++ HQ + + P S T+ + N +
Sbjct: 370 HSHGNTQEQQMLHQLLQEMTENGASVEQQQAFPGQSGSNNNTERNTTASTSNISGGGRVP 429
Query: 100 TRTNSDDALSNSNLTVAED 118
+R NS A SN+NL +ED
Sbjct: 430 SRINSFKASSNNNLPFSED 448
>At3g27550.1 68416.m03443 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 491
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 50 RGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCV-NSVSESQDVTRTNSDDAL 108
R + R R+ +PDP P R + DDV+ + N++ +S+D +DA
Sbjct: 382 RARSSNTNTRRPREDFKRRSPDPRPRPRAQVRSDDDVLSDLDNTMWDSED-----EEDAP 436
Query: 109 SNSNLTVAEDCANDEQEN 126
+ ++ ++D DE EN
Sbjct: 437 PANYISSSDD---DEDEN 451
>At2g12400.1 68415.m01339 expressed protein
Length = 541
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 74 PSARTTLTQTDDVVPCVNSVSESQDVTRT 102
P+A T L DD++PCV++ + + +TRT
Sbjct: 325 PTAHTAL---DDILPCVDNATARETLTRT 350
>At5g08020.1 68418.m00933 replication protein, putative similar to
replication protein A1 [Oryza sativa] GI:2258469;
contains InterPro entry IPR004365: OB-fold nucleic acid
binding domain
Length = 604
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 64 PAPATNPDPEPSARTTLTQTD--DVVPCVNSVSESQDVTRTNSDDALSNSNLTVAED 118
P N P T + Q D DV+ V SVS + + R N ++ + ++T+A++
Sbjct: 271 PETKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADE 327
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 61 DRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCA 120
++ P+P+ +P P PS + P V + +V R ++ D+ SNS++ +D A
Sbjct: 530 EQSPSPSPSPSPSPSPSPS--------PSVLASECCSEVERIDTLDSESNSSI---DDSA 578
Query: 121 NDEQEN 126
D QE+
Sbjct: 579 TDHQED 584
>At5g62810.1 68418.m07884 peroxisomal protein (PEX14) identical to
PEX14 [Arabidopsis thaliana] GI:11094252; contains Pfam
profile PF04695: Peroxisomal membrane anchor protein
(Pex14p) conserved region; supporting cDNA
gi|11094253|dbj|AB037539.1|
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 70 PDPEPSARTTLTQTDDVVPCVNSV 93
PDP PS++TT+T + D V++V
Sbjct: 100 PDPPPSSQTTVTTSQDGQQAVSTV 123
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 90 VNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQENELDR 130
+++ + QD+ + S++A NLT+ E+ A++ E E +R
Sbjct: 321 IDASKKMQDLNQRRSEEATRLKNLTIREEEADEVVEMERER 361
>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1101
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 52 HQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRT-NSDDALSN 110
H+H L D +T+P +P TLT ++ ++++ ++ T+ + +D+LS
Sbjct: 739 HEHSANLELD-----STSPSLKPVEEDTLTSESGLLEMKSNINNQEETTKALHGEDSLSK 793
Query: 111 SNLTVAEDCANDEQENELDRV 131
++ E+ A + LD V
Sbjct: 794 HPVSAHEE-ATTRYNSILDMV 813
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.127 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,541,051
Number of Sequences: 28952
Number of extensions: 157330
Number of successful extensions: 511
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 20
length of query: 244
length of database: 12,070,560
effective HSP length: 79
effective length of query: 165
effective length of database: 9,783,352
effective search space: 1614253080
effective search space used: 1614253080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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