GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001582-TA|BGIBMGA001582-PA|undefined
         (88 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   2.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   4.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   6.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   6.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   6.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 42  EARQLQKKIQTIE--NELDQTQESLMQVNGKLEEKEKALQNV 81
           + ++   KI  +   N+L   + +L   NG +E  +   QN+
Sbjct: 380 DTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNI 421


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 49  KIQTIENELDQTQESLMQVNGKLEEKEKA 77
           K+   ENE    ++SL+ +   L+E  K+
Sbjct: 280 KLINAENETAHIKDSLIVLTSALQEMNKS 308


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 26   EQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQ 79
            +QQ +    + ++ +++ +Q QK+   +   + Q Q      N +  E+  + Q
Sbjct: 1526 QQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNSGNNRSGEQANSQQ 1579



 Score = 19.8 bits (39), Expect = 5.2
 Identities = 7/28 (25%), Positives = 18/28 (64%)

Query: 22   AAMCEQQAKDANLRAEKAEEEARQLQKK 49
            AAM +QQ +    + ++ +++ +Q Q++
Sbjct: 1205 AAMVQQQQQQQQQQQQQQQQQQQQQQQQ 1232


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 28  QAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEK 76
           + K++  +  +  ++   ++KK+  +   +DQ  E     +GKL+  +K
Sbjct: 221 EGKESKTKLSQWRKDGGTVKKKVNYVYRSVDQVLE-----DGKLKPNKK 264



 Score = 19.0 bits (37), Expect = 9.1
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 20  DRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQ 66
           DR    E + K+ +   ++  +    L+  +  ++  +D+T +  +Q
Sbjct: 346 DRVVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQ 392


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 13  LEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKK 49
           LEK  AL RAA         +   EK++++  +  K+
Sbjct: 396 LEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKE 432


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 13  LEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKK 49
           LEK  AL RAA         +   EK++++  +  K+
Sbjct: 396 LEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKE 432


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 13  LEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKK 49
           LEK  AL RAA         +   EK++++  +  K+
Sbjct: 396 LEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKE 432


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.121    0.300 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,316
Number of Sequences: 429
Number of extensions: 598
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 88
length of database: 140,377
effective HSP length: 48
effective length of query: 40
effective length of database: 119,785
effective search space:  4791400
effective search space used:  4791400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)
S2: 37 (19.0 bits)