Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001581-TA|BGIBMGA001581-PA|IPR000953|Chromo,
IPR008676|MRG
         (307 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    31   0.011
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          27   0.23 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 54  VPESRV---LKYNEANVQRQKEVQRAHSAQPTKTK--KIKESDSTPAPAKTTKTQSKDTP 108
           +PESRV    K   A  ++Q + Q+  SA  T T   K+K S ++PA A  +       P
Sbjct: 166 LPESRVQVWFKNRRAKCRQQLQQQQNKSASRTTTSPTKVKASKASPAAAPRSVATPTGIP 225

Query: 109 ADSGSDQP 116
             S S  P
Sbjct: 226 TPSTSASP 233


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 83  KTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRG 121
           K + +K+ D +     TT  + KD+ +DS  ++P+   G
Sbjct: 76  KPENVKKEDESDEEKPTTSFKLKDSSSDSEDERPRPGGG 114


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 49  NWDEWVPESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSK 105
           +W   VPE           ++ KE++   + +P  TK  +     P P +  + + K
Sbjct: 223 DWVRNVPECADWYKGRLTDEQLKELENPPTPKPRPTKVSRRKPRPPRPTQVEEEEEK 279


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 80  QPTKTKKIKESDSTPAPAKTTKTQSKDT 107
           QPT+T + + + ++  P +++ TQ   T
Sbjct: 402 QPTQTTESEPTQASEQPTESSTTQKPQT 429


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 44  AGWNKNWDE 52
           +GW K WDE
Sbjct: 321 SGWTKKWDE 329


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,204
Number of Sequences: 317
Number of extensions: 3014
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 307
length of database: 114,650
effective HSP length: 57
effective length of query: 250
effective length of database: 96,581
effective search space: 24145250
effective search space used: 24145250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)