Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001581-TA|BGIBMGA001581-PA|IPR000953|Chromo,
IPR008676|MRG
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 203 2e-53
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 34 0.022
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.029
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 34 0.029
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 31 0.21
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 31 0.21
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 31 0.27
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.36
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 30 0.48
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 29 0.63
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 29 1.1
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 29 1.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.5
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 28 1.5
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 28 1.5
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.9
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 28 1.9
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 27 2.5
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 2.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.5
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 3.4
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 3.4
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 4.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 4.4
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 27 4.4
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.4
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 27 4.4
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 5.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 5.9
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 26 5.9
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 5.9
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 26 5.9
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 5.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 7.8
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 7.8
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 7.8
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 203 bits (496), Expect = 2e-53
Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 47/337 (13%)
Query: 5 LKFAEGEKVLCFHGPLIYEAKCLKSSVTKDKHVRYLIHYAGWNKNWDEWVPESRVLKYNE 64
+ + E+VLCFHGPL+YEAK + + + D YLIHY GW +WDEWV + R+L++ E
Sbjct: 3 VSYKVNERVLCFHGPLLYEAKIVDTEMKGDV-TTYLIHYKGWKNSWDEWVEQDRILQWTE 61
Query: 65 ANVQRQKEVQRA-------------------HSAQPTKT--KKIKESDST---------P 94
N++ QKE++ A H + KT K+ +ES + P
Sbjct: 62 ENLKTQKELKNAAISTRQKPTSKKSASSTSKHDSTGVKTSGKRSRESSTVTVDGDSHELP 121
Query: 95 APAKTTKTQS-------KDTPADSGSDQPKKKRGRLDLSIESEEQYLAKVEVKIKIPEEL 147
+ KT K++S +D D+ +++ K E EE L K KI +P+ L
Sbjct: 122 SRIKTQKSESPIPQQVKRDGTTDAKNEETTKPENNEKDDFE-EEPPLPKH--KISVPDVL 178
Query: 148 KVWLVDDWDVITRQQKLAILPAKLTVSQIVDNYLAFKKSSKSH--NQAKESVLVDITEGI 205
K+WLVDDW+ IT+ Q+L +P TV + AF++S SH N+ V G+
Sbjct: 179 KLWLVDDWENITKNQQLIAIPRNPTVRAAI---AAFRESKISHLNNEIDVDVFEQAMAGL 235
Query: 206 KEYFNATLGSQLLYKFERPQYSEILQEYPDTPMSQVYGAVHLLRLFAKMGPMLAYTALDE 265
YFN LG+ LLY+FER QY EI Q+YPDT M +YG HL+RLF + ++ T +D
Sbjct: 236 VIYFNKCLGNMLLYRFERQQYLEIRQQYPDTEMCDLYGVEHLIRLFVSLPELIDRTNMDS 295
Query: 266 KSLHHVLSHIQDFLKYMVTNRSTLFNLQDYGNATPEY 302
+S+ +L++I++FLKY+V ++ F +++Y NA P Y
Sbjct: 296 QSIECLLNYIEEFLKYLVLHKDEYF-IKEYQNAPPNY 331
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 34.3 bits (75), Expect = 0.022
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 43 YAGWNKNWDEWVPESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKT 102
++ W + +E E RV + ++ + ++E ++ HS++ K+KK + S P K K
Sbjct: 139 FSEWMQKAEE--DEDRVCEDASSSDEAKREKRKKHSSKK-KSKKKTSTGSALDPKKLEKI 195
Query: 103 QSKDTPADSGSDQPKKKRGRLDLSIESEEQYLAKVEVKIKIPE 145
K D+ + R S + EE+ K+++K K PE
Sbjct: 196 TKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDK-PE 237
Score = 29.5 bits (63), Expect = 0.63
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 67 VQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLS 126
+ ++K+ + + + +KK K S K K + KD P +S S K K G S
Sbjct: 195 ITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKP-ESTSSVEKVKEGNRPAS 253
Query: 127 I--ESEEQYLAKVEVKIKIPEELK 148
I + ++LA+ + P L+
Sbjct: 254 IHFHTRRKFLAQKRAAVSDPVALR 277
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.9 bits (74), Expect = 0.029
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 70 QKEVQRAHSAQPT-------KTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGR 122
+KE +RA S +P+ K K KE S+ + ++++ ++S+ + ++S S + +
Sbjct: 55 KKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSS 114
Query: 123 LD-LSIESEEQYLAKVEVK 140
+ S ESEE+ + K E K
Sbjct: 115 SESSSSESEEEVIVKTEEK 133
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 61 KYNEANVQRQKEVQRAHS---AQPTKTKKIKESDSTPAPA-KTTKTQSKDTPADSGSDQP 116
K + + KE+ + S P K+KK + S+P P+ K+ K Q K + S +
Sbjct: 28 KSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSES 87
Query: 117 KKKRGRLDLSIESEE 131
+ + + S E
Sbjct: 88 ESESSSSESESSSSE 102
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 33.9 bits (74), Expect = 0.029
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 33 KDKHVRYLIHYAGWNKNWDEWVPESRVLKYNEANVQRQKEVQRAH--SAQPTKTKKIKES 90
+ + V Y +HY +NK DEW+ + ++ ++AH + K +
Sbjct: 46 RTRGVVYYVHYNDYNKRLDEWITIDNIDLSKGIEYPPPEKPKKAHGKGKSSKRPKAVDRR 105
Query: 91 DSTPAPAKT-TKTQSKDTPADS 111
S AP+KT T S + P S
Sbjct: 106 RSITAPSKTEPSTPSTEKPEPS 127
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 31.1 bits (67), Expect = 0.21
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 43 YAGWNKNWDEWVPESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKT 102
Y + NWD+ +PE + + E +R QRA + + ++ + + P++T K
Sbjct: 935 YKAEDLNWDDIIPEEEMERIEEE--ERMLAAQRAKEEERERREEEERENDEDHPSRTYKR 992
Query: 103 QSKDTPADSGSDQPKKKRGRLDLSIESEEQYLAKVEVKIKIPEE 146
+K K+++ R ++ E E + L + +K + +E
Sbjct: 993 TTKSI--------TKRQQRREEMVREKEIRLLYRAMIKFGLVDE 1028
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 31.1 bits (67), Expect = 0.21
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 55 PESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTP 108
P+ R ++ +Q+Q++ Q+ S QP +T++ + S T + + +S P
Sbjct: 142 PQQRQFLLQQSQIQQQRQQQQQQSQQPQQTQQPQASSPTAPNTEANQQRSGSVP 195
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 88 KESDSTPAPAKTTKTQSKDTPADSGSDQPKKKR 120
+E D+TP P T+K S+ P + G+ + K R
Sbjct: 88 EEEDATPEPVVTSKKNSRSKPKNGGASKRKASR 120
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.36
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 71 KEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQS-KDTPADSGSDQPKKKRGRLDLSIES 129
K Q A+S +K+ DST T K S +DT A++ + P KK+ ++E+
Sbjct: 567 KAQQEANSTTAEGKEKLS-GDSTETGNSTNKEASTEDTKANATASAPNKKK----KTVET 621
Query: 130 EEQYLAKVEVKIKIPEELKVWLVDDWDVITRQQKLAIL 167
+Q + K + +IP K+ + ++ T +K + L
Sbjct: 622 LQQQVIKEIARKEIPRVYKIIQQNQYNRSTNARKTSQL 659
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 62 YNEANVQRQKEVQRAHSAQPTKTKKIKE-SDSTPAPAKTTKTQSKDTPADSGSDQPKKKR 120
Y + N+Q + E+ S + K S++ PAP + + +++ + GS+ K ++
Sbjct: 602 YTQQNLQLEDEISEISSPSYSSDDDRKTISETQPAPKQNINEEFENSTSTDGSETNKNEQ 661
Query: 121 GRLDLSIESEEQYLAK 136
G LS E L K
Sbjct: 662 GN-SLSTPDNEPRLRK 676
Score = 29.1 bits (62), Expect = 0.83
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 72 EVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLSIESEE 131
E Q H A+ + + +++ P +T + AD SD + + +
Sbjct: 374 EEQSKHMARLHREGFSEAAENNDKPKETMPCTYDSSLADDHSDTSNLSKDKANTLCAQCS 433
Query: 132 QYLAKVEVKIKIPEELKVWLVDDWDVITRQQKLAILPAKLTVSQIVDNYLAFKKSSKSHN 191
YL++ K + + L + L + + ++K A L K +SQI L F++ K+H+
Sbjct: 434 VYLSE---KYQQQQSL-LQLESNIQQLENEKKAAKLIEKDLLSQISHVKLQFEQQIKAHH 489
Query: 192 QAKESV 197
AK+ V
Sbjct: 490 YAKDQV 495
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 73 VQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQP 116
++ AH A+P K S ++P T+ +SKDT SG P
Sbjct: 202 IKSAHPAEPPKRPAFTRSATSPDKILPTRIKSKDT-VSSGDSTP 244
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 10 GEKVLCFHGPLIYEAKCLKSSVTKDKHVRYLIHYAGWNKNWDEWVP 55
G ++ CFH + ++CLK + +H + + N W +P
Sbjct: 720 GSELRCFHCSISCHSRCLKRLFAESEHEKTMSETVSENSKWMPEMP 765
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 88 KESDSTPAPAKTTKTQ-SKDTPADSGSDQPKKKRGRLDLSIESEEQYLAKVEVK 140
K+S P P T+ Q + T +DS S++ K++ R + EE+Y A+ E +
Sbjct: 441 KDSTDEPPPITTSGVQYTSPTVSDSASNE-KEQEHRAQNEAQKEEEYRAESEAQ 493
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 70 QKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLSIES 129
QK A + +P ++ S T PA+ T++ +K ++ R R E
Sbjct: 931 QKFDDDAWANKPVTEPPVRASSVTVEPARVTESMNKMNISEEAKKPEAPSRPRTAPIPEP 990
Query: 130 EEQYLAKVEVK 140
EEQ A VE K
Sbjct: 991 EEQKKAPVEKK 1001
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 114 DQPKKKRGRLDLSIESEEQYLAKVEVKIKIPEELK 148
D P K GRL + I + ++ L +V ++IP K
Sbjct: 208 DSPLNKAGRLQVYIHTAKKVLIEVNPSVRIPRTFK 242
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 56 ESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSK-DTPADSGSD 114
E VL+ E +R+++++ SA +KT + + TP+ K S+ +P S
Sbjct: 360 EEEVLQEEEELQKREEKLKSRFSANASKTNTPRPLERTPSSVSPVKASSQLQSPNTSIQI 419
Query: 115 QPKK----KRGRLDLSIESEE 131
+P++ K G + L + SE+
Sbjct: 420 RPQEQLINKPGYIILRLSSEK 440
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 27.9 bits (59), Expect = 1.9
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 123 LDLSIESEEQYLAKVEVKIKIPEELKVWLVDDWDVITRQQKLAILPAKLTVSQIVDNYLA 182
LD+++ESE Q L + K EL +D R + A L ++ +N +
Sbjct: 584 LDMAVESERQKLLLTNKRYKAQIELLNSEIDK----HRSESQAALNRRVKWENDFNNKIK 639
Query: 183 FKKSSKSHNQAKESVLVDITEGIKEYFNATLGSQLLYKFERPQYSEILQEY 233
+ K +++ES L E + + SQ+ F + Q LQ Y
Sbjct: 640 ALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQLELKLQLY 690
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 67 VQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPK 117
V ++KE + SA P + ++S+ A K+T +S DTP ++ + K
Sbjct: 472 VSQEKERKGYTSASPDRPLSQTITESSVAKTKSTTPKSTDTPTEATTSPVK 522
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 229 ILQEYPDTPMSQVYGAVHLLRLFAKMGPMLAYTALDEKSLHHVLSHIQDFL 279
+++E P TP Q+ GA+ L K P+L +AL + VL + D+L
Sbjct: 301 VMEEDP-TP-EQLMGAIRRTTLARKFTPVLMGSALSNVGVQSVLDAVCDYL 349
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 238 MSQVYGAVHLLRLFAKMGPMLAYTALDEKSLHHVLSHIQDFLKYMVTNRSTLFNL 292
++++ G+ ++L LFA++ L D ++L+H L I F ++N L L
Sbjct: 181 LNRLGGSEYVLHLFAQIPKALCKELTDVRTLNHPLRSIFTFCFKNISNPPNLLKL 235
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.5
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 18 GPLIYEAKCLKSSVTKDKHVRYLIHY-AGWNKNWDEWV-PESRVLK----YNEANVQRQK 71
GP + K LK DK+ R + A W+K++ ++ P + V K A +
Sbjct: 358 GPQSMKKKTLKKEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTVEA 417
Query: 72 EVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKR 120
EV ++ K+ + E D A K K + K+ + + KK++
Sbjct: 418 EVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK 466
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 54 VPESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPADSGS 113
+PE RV K + + +KE ++ Q KK + T A ++ + TPA++ S
Sbjct: 172 IPEVRV-KTKKEKEREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDS 230
Query: 114 DQPKKK 119
K+
Sbjct: 231 SAKGKQ 236
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 100 TKTQSKDTPADSGSDQPKKKRGRLDLSIESEEQ 132
T Q D DS ++ P+K + RL++S++ E Q
Sbjct: 95 TALQQVDAENDSLNELPEKTKERLEVSLKEEHQ 127
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 82 TKTKKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKK 119
T K E STPA + TKT S + G Q KK
Sbjct: 661 TSLSKSLEHSSTPASLQATKTPSPSFVLEPGIPQEYKK 698
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 20 LIYEAKCLKSSVTKDKHVRYLIHYAGWNKNWDEWVPESRVLK--YNEANVQRQKEVQRAH 77
L+ E K L+ + + +RY I D+ + + +K N+ + +++K QR+
Sbjct: 915 LVTEIKTLQDKIMEIGGIRYRIQ----KSKVDDLHEQLKFVKDKLNKMSFKKKKNEQRSQ 970
Query: 78 SAQPTKTKKIKESDSTPAPAKTTKTQ 103
S Q + E D+T T KT+
Sbjct: 971 SFQVELSNLTSEYDTTTESIATLKTE 996
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 60 LKYNEANVQRQKEVQRAHSAQPTKTKKIKESD 91
+K E ++R+KE QRA A+ +T++ ++D
Sbjct: 48 IKEREKELKREKEEQRAAHAEKIRTRRQAKAD 79
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 194 KESVLVDITEGIKEYFNATLGSQLLYKFERPQYSEILQEYPDTPMSQVYGAVHLLR 249
K SVLV + E FN GS L + E+ EI+ + + +S + +LL+
Sbjct: 153 KTSVLVTTVAALWEQFNIFHGSYLFDEIEKKSSFEIIDRWWTSVLSPLECGGYLLK 208
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 48 KNWDEWVPESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDT 107
+N +++V S ++ ++ KE+ ++ + + ++S+P A +TK+
Sbjct: 375 QNNEDYVSVSSLVGSETEDITYSKELSQSSDSSQHQHDSFLPANSSPLAASSTKSLPSSE 434
Query: 108 PADSGSDQ 115
DS SD+
Sbjct: 435 LLDSSSDK 442
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/80 (21%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 57 SRVLKYNEANVQRQK-EVQRAHSAQPTKTKKIKESDSTPA--PAKTTKTQSKDTPADS-G 112
SR+ K ++++ + + E + A S++ +++ ES+ + P K S+D+ +DS
Sbjct: 28 SRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSES 87
Query: 113 SDQPKKKRGRLDLSIESEEQ 132
S++ ++ D + E +
Sbjct: 88 SEEEEETESEEDSEVSDESE 107
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 78 SAQPTKTKKIKESDSTPAPAKTTKTQSKDTPA 109
S++ K KK K ++ AP K KT+ K+ A
Sbjct: 173 SSEKDKKKKKKSKENDDAPKKDRKTRKKEEKA 204
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 42 HYAGWNKNWDEWVPESRVLKY----NEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPA 97
H+A W V SR + + NEAN Q KE S + ++ + + P PA
Sbjct: 194 HFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNVRWATTDPNPA 253
Query: 98 KTTKTQSK 105
+ Q +
Sbjct: 254 SQARNQRR 261
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 89 ESDSTPAPAKTTKTQSK--DTPADSGSDQPKKKRGRLDLSIESEEQYLAK 136
ES++ P + + + +TPA + + +PKKKRG ++ SE + L +
Sbjct: 1018 ESEARPTRGRPKRNIASVDETPALTLNGKPKKKRGPAPDTLTSEHRSLLR 1067
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 5.9
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 85 KKIKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLSIESEEQYLAKVEVKIKIP 144
KK + PA + TK + PA QP K LDL IES E +L K E + K
Sbjct: 241 KKRNVARRKPAKIRETKEYTPFPPA-----QPPSK---LDLEIESGEYFLKKEEKERKKR 292
Query: 145 EELK 148
E K
Sbjct: 293 AEKK 296
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 5.9
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 174 SQIVDNYLAFKKSSKSHNQAKESVLVD-ITEGIKEYFNATLGSQLLYKFERPQYSEILQE 232
SQ N LAF + K+ + +++ L E + G++L YK + S+ +
Sbjct: 257 SQTSKNLLAFNDAQKADSNNRDTSLKSHFVEPRTQALRP--GARLTYKLREARSSKRGES 314
Query: 233 YPDTPMSQVYGAVHLLRLFAKMGPMLAYTALDE 265
P + + + LL+LF K +LA L E
Sbjct: 315 TPQSFREEDNNLMELLKLFGKGVYLLAQYKLRE 347
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 51 DEWVPESRVLKYNEANVQRQKEVQRAHSAQPTKTKKIKESDSTPAPAKTTKTQSKDTPAD 110
D+ V S+ +K A+V + K+ A +++ K S + P+KT + + + PA+
Sbjct: 273 DQAVASSKPIKKAWASVAKSKKKVTPAPAPAPESEPSKPSIAPSQPSKTNVSAAYEKPAE 332
Query: 111 SGS 113
S
Sbjct: 333 LSS 335
>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 268
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 26 CLKSSVTKDKHVRYLIHYAGW-NKNWDEWVPESR 58
C+KS V K I W KN+ EW+P SR
Sbjct: 29 CIKSEVDFYKTCNDNITLYNWIPKNFGEWMPSSR 62
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 124 DLSIESEEQYLAKVEVKIKI---PEELKVWLVDD 154
DLSI S ++LAKV + I PE K+ +VD+
Sbjct: 623 DLSITSATEFLAKVATFLPIKQRPEVSKISIVDE 656
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,028
Number of Sequences: 5004
Number of extensions: 61840
Number of successful extensions: 269
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 47
length of query: 307
length of database: 2,362,478
effective HSP length: 73
effective length of query: 234
effective length of database: 1,997,186
effective search space: 467341524
effective search space used: 467341524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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