Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001580-TA|BGIBMGA001580-PA|undefined
         (308 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)                   134   1e-31
SB_51111| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  

>SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)
          Length = 525

 Score =  134 bits (323), Expect = 1e-31
 Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 7/168 (4%)

Query: 10  GTEAAHQLVVFVRNKCTPEEALNVLRDLPNPL-------KEGEQTANQPTAYNPLKIDVF 62
           G + A QL   +R K  PEE   +L ++            + +       A+  L++DVF
Sbjct: 334 GGDIAKQLTEAIRAKKDPEELQALLNEISTSSGGATGDDDDNDDVPKAEAAFFSLRMDVF 393

Query: 63  VQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLIDK 122
           +QT+L LGSKSISHS++A++KFH + K L  +EEAQI  L+ + E W   PQM  +L+DK
Sbjct: 394 LQTILYLGSKSISHSYSALTKFHKILKSLIPTEEAQIHALKTLKEFWCNSPQMTIILVDK 453

Query: 123 MLKTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKL 170
           +++ Q+VEC+AV  WL  K+M+  FT    WE++  TI +MN  V+K+
Sbjct: 454 LIRMQVVECTAVINWLLCKDMSQDFTKSYTWELMTTTIRRMNMQVNKV 501


>SB_51111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 238 ILSEHLVRCDTDARDPHTHWYRATLHRLTQVFLIHHEQVQKYSSTL 283
           I +EH+ RC  D+RD  T  YR  LHR+ +       ++ + SSTL
Sbjct: 352 ITTEHMSRCH-DSRDSITGTYRIVLHRIQK----RKTELSRKSSTL 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,558,241
Number of Sequences: 59808
Number of extensions: 301368
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 2
length of query: 308
length of database: 16,821,457
effective HSP length: 82
effective length of query: 226
effective length of database: 11,917,201
effective search space: 2693287426
effective search space used: 2693287426
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)