Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001580-TA|BGIBMGA001580-PA|undefined
(308 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003132-1|AAB54133.3| 798|Caenorhabditis elegans Hypothetical ... 87 2e-17
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 1.8
Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical p... 29 5.5
Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 28 7.3
DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagella... 28 7.3
DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagella... 28 7.3
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 28 7.3
>AF003132-1|AAB54133.3| 798|Caenorhabditis elegans Hypothetical
protein F37E3.1 protein.
Length = 798
Score = 86.6 bits (205), Expect = 2e-17
Identities = 40/131 (30%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 39 NPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEA- 97
N LK ++ P YN + +FV +L + SK+ SH+F+A+ ++ K + ++ E
Sbjct: 520 NELKSNDENDELP--YNINEFGLFVMVMLKMASKTYSHNFSALFRYQTTLKTVCDASELY 577
Query: 98 QICILRNVWELWQRHPQMVCVLIDKMLKTQIVECSAVATWLFSKEMAPYFTHGCLWEMLH 157
Q +L ++ W+ + QM+ +L DK+LK Q+++CSAV WLF ++M L+E+L+
Sbjct: 578 QEKLLETLYSCWKTNQQMLMILTDKLLKMQVIDCSAVVGWLFDEKMWQEHDRQWLFEVLN 637
Query: 158 LTIDKMNKHVS 168
++K+ + ++
Sbjct: 638 QALEKLTRQIN 648
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 253 PHTHWYRATLHRLTQVFLIHHEQVQKYSSTLETLLFTQDLDPHILDVFHQFVAL 306
P W R R V L H E + K+SS + +F++ DP I++ F+QF +L
Sbjct: 746 PKFMWLRG---RFCHVLLAHAETLLKHSSNIADEVFSEGTDPSIIECFNQFQSL 796
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 23 NKCTPEEALNVLRDLPNPLKEGEQTANQPTAYNP---LKIDVFVQTLLNLGSKSISHSFA 79
NKC P++ LNVL + + ++ + + + P + D F+ LL G K +
Sbjct: 53 NKCKPDQRLNVLYVIDSIVRASKHQLKEKDTFGPRFMKQFDKFLMPLLKCGQKEKMRTVR 112
Query: 80 AISKFHYVFKILAESE 95
++ + K+ ESE
Sbjct: 113 TLNLW-MSNKVFKESE 127
>Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 115 MVCVLIDKMLKTQIVECSA-VATWLFSKE 142
+ C++ID LKT ++ +A + TW+ +E
Sbjct: 142 LACIVIDHFLKTSNIQAAARIVTWMIQQE 170
>Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 115 MVCVLIDKMLKTQIVECSA-VATWLFSKE 142
+ C++ID LKT ++ +A + TW+ +E
Sbjct: 142 LACIVIDHFLKTSNIQAAARIVTWMIQQE 170
>Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical
protein F46F6.4d protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 33 VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
++++ P L+E +T P+A + ++ +V+ LN+ + S I H +F +L
Sbjct: 211 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 268
Query: 93 ESEEAQ 98
E +Q
Sbjct: 269 EFNNSQ 274
>Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical
protein F46F6.4c protein.
Length = 320
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 33 VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
++++ P L+E +T P+A + ++ +V+ LN+ + S I H +F +L
Sbjct: 233 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 290
Query: 93 ESEEAQ 98
E +Q
Sbjct: 291 EFNNSQ 296
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 33 VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
++++ P L+E +T P+A + ++ +V+ LN+ + S I H +F +L
Sbjct: 384 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 441
Query: 93 ESEEAQ 98
E +Q
Sbjct: 442 EFNNSQ 447
>DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagellar
transport proteinvariant c protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 33 VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
++++ P L+E +T P+A + ++ +V+ LN+ + S I H +F +L
Sbjct: 211 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 268
Query: 93 ESEEAQ 98
E +Q
Sbjct: 269 EFNNSQ 274
>DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagellar
transport proteinvariant b protein.
Length = 320
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 33 VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
++++ P L+E +T P+A + ++ +V+ LN+ + S I H +F +L
Sbjct: 233 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 290
Query: 93 ESEEAQ 98
E +Q
Sbjct: 291 EFNNSQ 296
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 33 VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
++++ P L+E +T P+A + ++ +V+ LN+ + S I H +F +L
Sbjct: 387 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 444
Query: 93 ESEEAQ 98
E +Q
Sbjct: 445 EFNNSQ 450
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.135 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,420,433
Number of Sequences: 27539
Number of extensions: 229534
Number of successful extensions: 665
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 11
length of query: 308
length of database: 12,573,161
effective HSP length: 81
effective length of query: 227
effective length of database: 10,342,502
effective search space: 2347747954
effective search space used: 2347747954
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)
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