GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001580-TA|BGIBMGA001580-PA|undefined
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    47   4e-06
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   3.4  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   7.8  

>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 22/97 (22%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 68  NLGSKSISHSFAAISKFHYVFKILA-ESEEAQICILRNVWELWQRHPQMVCVLIDKMLKT 126
           +LGS+S SH+     K     K  + +S +++I ++  ++  W+  P    + +DKML  
Sbjct: 569 SLGSRSFSHALNVFEKHLNTLKHFSRKSLDSEIEVVDELFSFWKLQPFNAVMWLDKMLNY 628

Query: 127 QIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKM 163
            I+  +++  WL  +++   ++    W +++ T +K+
Sbjct: 629 SIISITSIIEWLIKQDVT-IWSRSYTWSLVNTTFNKL 664


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 100 CILRNVWELWQRHPQMVCVLIDKMLKTQIVECSAVATWLFSK 141
           CIL  VW L+   P++   LI  +  T    C  V ++L  K
Sbjct: 250 CILPQVWSLFSTQPRLASQLIIAVTNT---HCDIVTSFLLKK 288


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 63   VQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLIDK 122
            +Q L  L  ++ +   +  + + YV+ +    E   +  L+ +  LW+ H Q+ C L D+
Sbjct: 1390 MQCLFLLTVEATNSIISPNADYEYVWSLEDVFENEDVSSLKQLHNLWKPHLQLNC-LSDE 1448

Query: 123  MLKTQIVEC 131
            + +  I  C
Sbjct: 1449 VAQYYITLC 1457


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 113 PQMVCVLIDKMLKTQIVECSAVATWLFSKEMAPYF 147
           P M+  LI K +   I+E S    W+  + + PYF
Sbjct: 477 PLMLATLISKWVSDSIIETSIYDAWIQFRNI-PYF 510


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,148
Number of Sequences: 5004
Number of extensions: 42941
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 4
length of query: 308
length of database: 2,362,478
effective HSP length: 73
effective length of query: 235
effective length of database: 1,997,186
effective search space: 469338710
effective search space used: 469338710
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)