GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001580-TA|BGIBMGA001580-PA|undefined
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499...    66   3e-11
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    29   6.2  
05_05_0200 - 23171803-23171906,23172304-23173951                       28   8.2  

>03_02_0984 +
           12947444-12947530,12949071-12949127,12949833-12949904,
           12950050-12950112,12950955-12951131,12951503-12951628,
           12951711-12951777,12952019-12952215,12952617-12952691,
           12954524-12954554,12954714-12954802,12955120-12955188,
           12955306-12955425,12955963-12956081,12956303-12956441,
           12956538-12957038,12957293-12957592,12957694-12957875,
           12958277-12958388,12958953-12959072
          Length = 900

 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 59  IDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCV 118
           +DV  QTLL++GSKS +H    + ++  +   L  +EE Q+ ++  V   W+   QM+ +
Sbjct: 567 LDVVSQTLLDIGSKSFTHLITVLERYGQIISKLCPNEEMQLLLMDEVSAYWKNSTQMIAI 626

Query: 119 LIDKMLKTQIVECSAVATWLFSKEMAPYF-THGCLWEMLHLTIDKMNKHVSKL 170
            ID+M+  +++   A+  W+FS      F      WE+L   + K    +  L
Sbjct: 627 AIDRMMGYRLLSNLAIVKWVFSPANVDQFHVSDRPWEILRNAVSKTYNRIFDL 679


>03_05_0944 +
           29046793-29046922,29048091-29048464,29048556-29048687,
           29048829-29049210,29049370-29049513,29049593-29049777,
           29049925-29050051,29050603-29050676,29051071-29051147,
           29051256-29051292,29051453-29051619,29051800-29051983,
           29052053-29052130,29052451-29052570,29052648-29052707,
           29053057-29053179,29053848-29053941,29054019-29054197,
           29054737-29055039,29055373-29055474,29055553-29055693,
           29055831-29055995,29056168-29056344,29056432-29056554,
           29057787-29057867,29057983-29058099,29058214-29058386,
           29058846-29058923,29058994-29059141,29059755-29059877,
           29060015-29060071,29060145-29060255,29060382-29060573,
           29060690-29060863,29061263-29061373,29061462-29061531,
           29061734-29061812,29061898-29062000,29062086-29062256,
           29062348-29062470,29062548-29062661,29062935-29063041,
           29063117-29063168,29063245-29063351,29063589-29063703,
           29063819-29063929,29064016-29064153,29064230-29064352,
           29064535-29064606,29064774-29064886,29066780-29067110,
           29067199-29067381,29068669-29068863,29068943-29069110,
           29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 54  YNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHP 113
           Y PL +D++V+T+  LGSK    S A+   F  +F  +   E+ +  ++ +  ++ +R+P
Sbjct: 211 YKPLFLDLYVKTI--LGSKD-RPSQASAEAFKPLFLDMGH-EDFKNIVVPSCIKMLKRNP 266

Query: 114 QMVCVLIDKMLKTQIVECS 132
           ++V   I  +L T  ++ S
Sbjct: 267 EIVLQSIGYLLNTVRLDLS 285


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 44  GEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYV 87
           G++T   PT  + L  D F   L  +G++ +  SF+A+S FH++
Sbjct: 534 GDRTMKAPTP-SVLHRDGFDINLFIIGTEPMFDSFSAVSPFHHL 576


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,214,072
Number of Sequences: 37544
Number of extensions: 247039
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 3
length of query: 308
length of database: 14,793,348
effective HSP length: 82
effective length of query: 226
effective length of database: 11,714,740
effective search space: 2647531240
effective search space used: 2647531240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)