GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001580-TA|BGIBMGA001580-PA|undefined
         (308 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051796-1|AAK93220.1|  800|Drosophila melanogaster LD31211p pro...   365   e-101
AJ238970-1|CAB53186.1|  800|Drosophila melanogaster cap binding ...   365   e-101
AE014298-657|AAF45970.1|  800|Drosophila melanogaster CG7035-PB,...   365   e-101
AE014298-656|AAN09124.1|  800|Drosophila melanogaster CG7035-PA,...   365   e-101
BT022805-1|AAY55221.1|  753|Drosophila melanogaster IP13758p pro...    83   4e-16
BT022776-1|AAY55192.1|  753|Drosophila melanogaster IP13958p pro...    83   4e-16
AE014297-3006|AAF55893.1|  747|Drosophila melanogaster CG7907-PA...    83   4e-16

>AY051796-1|AAK93220.1|  800|Drosophila melanogaster LD31211p
           protein.
          Length = 800

 Score =  365 bits (899), Expect = e-101
 Identities = 185/308 (60%), Positives = 214/308 (69%), Gaps = 6/308 (1%)

Query: 5   SAALPGTEAAHQLVVFVRNKCTPEEALNVLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQ 64
           +A LPGT  AHQLVV +R KCTPEE +N+L+D+PN    GE+ ++   ++N LKIDVFVQ
Sbjct: 495 AANLPGTTVAHQLVVAIRQKCTPEEVVNILKDIPNSGYSGEEMSDG--SFNALKIDVFVQ 552

Query: 65  TLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLIDKML 124
           TLLNLGSKS SHSFAAISKFH VF+ LAE+EEAQICIL N++ELW  H QM+ VLIDK+L
Sbjct: 553 TLLNLGSKSFSHSFAAISKFHSVFRALAETEEAQICILHNIFELWSSHQQMMVVLIDKLL 612

Query: 125 KTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKLSXXXXXXXXXXXXX 184
           K QIV+CSAVATW+FSKEM   FT   LWE+LHLTI KMNKHV KL+             
Sbjct: 613 KLQIVDCSAVATWIFSKEMTGEFTKLYLWEILHLTIKKMNKHVIKLNTELSEAKEKLAKA 672

Query: 185 XXXXXXXXXXXXXXX----XXXXXPTXXXXXXXXXXXXXXHMDQKRLFLIVFQRFIMILS 240
                                   P+              +++QKRLFLIVFQRFIMILS
Sbjct: 673 DSSSSDSEDDSSHKRKKPITHADKPSEEVVERMEEKLEAANVNQKRLFLIVFQRFIMILS 732

Query: 241 EHLVRCDTDARDPHTHWYRATLHRLTQVFLIHHEQVQKYSSTLETLLFTQDLDPHILDVF 300
           EHL+R DTD RDP T WYR T+ RL QVFL+HHEQVQKYSSTLETLLFT DLD HIL+VF
Sbjct: 733 EHLLRSDTDGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTLETLLFTSDLDTHILEVF 792

Query: 301 HQFVALTA 308
            QFVAL A
Sbjct: 793 QQFVALRA 800


>AJ238970-1|CAB53186.1|  800|Drosophila melanogaster cap binding
           protein 80 protein.
          Length = 800

 Score =  365 bits (899), Expect = e-101
 Identities = 185/308 (60%), Positives = 214/308 (69%), Gaps = 6/308 (1%)

Query: 5   SAALPGTEAAHQLVVFVRNKCTPEEALNVLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQ 64
           +A LPGT  AHQLVV +R KCTPEE +N+L+D+PN    GE+ ++   ++N LKIDVFVQ
Sbjct: 495 AANLPGTTVAHQLVVAIRQKCTPEEVVNILKDIPNSGYSGEEMSDG--SFNALKIDVFVQ 552

Query: 65  TLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLIDKML 124
           TLLNLGSKS SHSFAAISKFH VF+ LAE+EEAQICIL N++ELW  H QM+ VLIDK+L
Sbjct: 553 TLLNLGSKSFSHSFAAISKFHSVFRALAETEEAQICILHNIFELWSSHQQMMVVLIDKLL 612

Query: 125 KTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKLSXXXXXXXXXXXXX 184
           K QIV+CSAVATW+FSKEM   FT   LWE+LHLTI KMNKHV KL+             
Sbjct: 613 KLQIVDCSAVATWIFSKEMTGEFTKLYLWEILHLTIKKMNKHVIKLNTELSEAKEKLAKA 672

Query: 185 XXXXXXXXXXXXXXX----XXXXXPTXXXXXXXXXXXXXXHMDQKRLFLIVFQRFIMILS 240
                                   P+              +++QKRLFLIVFQRFIMILS
Sbjct: 673 DSSSSDSEDDSSHKRKKPITHADKPSEEVVERMEEKLEAANVNQKRLFLIVFQRFIMILS 732

Query: 241 EHLVRCDTDARDPHTHWYRATLHRLTQVFLIHHEQVQKYSSTLETLLFTQDLDPHILDVF 300
           EHL+R DTD RDP T WYR T+ RL QVFL+HHEQVQKYSSTLETLLFT DLD HIL+VF
Sbjct: 733 EHLLRSDTDGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTLETLLFTSDLDTHILEVF 792

Query: 301 HQFVALTA 308
            QFVAL A
Sbjct: 793 QQFVALRA 800


>AE014298-657|AAF45970.1|  800|Drosophila melanogaster CG7035-PB,
           isoform B protein.
          Length = 800

 Score =  365 bits (899), Expect = e-101
 Identities = 185/308 (60%), Positives = 214/308 (69%), Gaps = 6/308 (1%)

Query: 5   SAALPGTEAAHQLVVFVRNKCTPEEALNVLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQ 64
           +A LPGT  AHQLVV +R KCTPEE +N+L+D+PN    GE+ ++   ++N LKIDVFVQ
Sbjct: 495 AANLPGTTVAHQLVVAIRQKCTPEEVVNILKDIPNSGYSGEEMSDG--SFNALKIDVFVQ 552

Query: 65  TLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLIDKML 124
           TLLNLGSKS SHSFAAISKFH VF+ LAE+EEAQICIL N++ELW  H QM+ VLIDK+L
Sbjct: 553 TLLNLGSKSFSHSFAAISKFHSVFRALAETEEAQICILHNIFELWSSHQQMMVVLIDKLL 612

Query: 125 KTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKLSXXXXXXXXXXXXX 184
           K QIV+CSAVATW+FSKEM   FT   LWE+LHLTI KMNKHV KL+             
Sbjct: 613 KLQIVDCSAVATWIFSKEMTGEFTKLYLWEILHLTIKKMNKHVIKLNTELSEAKEKLAKA 672

Query: 185 XXXXXXXXXXXXXXX----XXXXXPTXXXXXXXXXXXXXXHMDQKRLFLIVFQRFIMILS 240
                                   P+              +++QKRLFLIVFQRFIMILS
Sbjct: 673 DSSSSDSEDDSSHKRKKPITHADKPSEEVVERMEEKLEAANVNQKRLFLIVFQRFIMILS 732

Query: 241 EHLVRCDTDARDPHTHWYRATLHRLTQVFLIHHEQVQKYSSTLETLLFTQDLDPHILDVF 300
           EHL+R DTD RDP T WYR T+ RL QVFL+HHEQVQKYSSTLETLLFT DLD HIL+VF
Sbjct: 733 EHLLRSDTDGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTLETLLFTSDLDTHILEVF 792

Query: 301 HQFVALTA 308
            QFVAL A
Sbjct: 793 QQFVALRA 800


>AE014298-656|AAN09124.1|  800|Drosophila melanogaster CG7035-PA,
           isoform A protein.
          Length = 800

 Score =  365 bits (899), Expect = e-101
 Identities = 185/308 (60%), Positives = 214/308 (69%), Gaps = 6/308 (1%)

Query: 5   SAALPGTEAAHQLVVFVRNKCTPEEALNVLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQ 64
           +A LPGT  AHQLVV +R KCTPEE +N+L+D+PN    GE+ ++   ++N LKIDVFVQ
Sbjct: 495 AANLPGTTVAHQLVVAIRQKCTPEEVVNILKDIPNSGYSGEEMSDG--SFNALKIDVFVQ 552

Query: 65  TLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLIDKML 124
           TLLNLGSKS SHSFAAISKFH VF+ LAE+EEAQICIL N++ELW  H QM+ VLIDK+L
Sbjct: 553 TLLNLGSKSFSHSFAAISKFHSVFRALAETEEAQICILHNIFELWSSHQQMMVVLIDKLL 612

Query: 125 KTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKLSXXXXXXXXXXXXX 184
           K QIV+CSAVATW+FSKEM   FT   LWE+LHLTI KMNKHV KL+             
Sbjct: 613 KLQIVDCSAVATWIFSKEMTGEFTKLYLWEILHLTIKKMNKHVIKLNTELSEAKEKLAKA 672

Query: 185 XXXXXXXXXXXXXXX----XXXXXPTXXXXXXXXXXXXXXHMDQKRLFLIVFQRFIMILS 240
                                   P+              +++QKRLFLIVFQRFIMILS
Sbjct: 673 DSSSSDSEDDSSHKRKKPITHADKPSEEVVERMEEKLEAANVNQKRLFLIVFQRFIMILS 732

Query: 241 EHLVRCDTDARDPHTHWYRATLHRLTQVFLIHHEQVQKYSSTLETLLFTQDLDPHILDVF 300
           EHL+R DTD RDP T WYR T+ RL QVFL+HHEQVQKYSSTLETLLFT DLD HIL+VF
Sbjct: 733 EHLLRSDTDGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTLETLLFTSDLDTHILEVF 792

Query: 301 HQFVALTA 308
            QFVAL A
Sbjct: 793 QQFVALRA 800


>BT022805-1|AAY55221.1|  753|Drosophila melanogaster IP13758p
           protein.
          Length = 753

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 57  LKIDVFVQTLLNLGSKSISHSFAAISKFHYVFK-ILAESEEAQICILRNVWELWQRHPQM 115
           LKI+VF Q  L+LGSKS SH+F  + K+H VFK ++A   E Q  +L  ++++W    Q 
Sbjct: 542 LKINVFTQNCLHLGSKSFSHTFGILRKYHSVFKDLVAGDPERQAAVLNGIFDVWVASDQY 601

Query: 116 VCVLIDKMLKTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKL 170
             V+ +K++   I+E  +V  W+F   M    T   +WE+LH  +  + +   K+
Sbjct: 602 KFVVTEKLVTGLIIEPISVVRWIFGPSMRKELTKIYIWELLHSALRHLKRVQQKI 656


>BT022776-1|AAY55192.1|  753|Drosophila melanogaster IP13958p
           protein.
          Length = 753

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 57  LKIDVFVQTLLNLGSKSISHSFAAISKFHYVFK-ILAESEEAQICILRNVWELWQRHPQM 115
           LKI+VF Q  L+LGSKS SH+F  + K+H VFK ++A   E Q  +L  ++++W    Q 
Sbjct: 542 LKINVFTQNCLHLGSKSFSHTFGILRKYHSVFKDLVAGDPERQAAVLNGIFDVWVASDQY 601

Query: 116 VCVLIDKMLKTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKL 170
             V+ +K++   I+E  +V  W+F   M    T   +WE+LH  +  + +   K+
Sbjct: 602 KFVVTEKLVTGLIIEPISVVRWIFGPSMRKELTKIYIWELLHSALRHLKRVQQKI 656


>AE014297-3006|AAF55893.1|  747|Drosophila melanogaster CG7907-PA
           protein.
          Length = 747

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 57  LKIDVFVQTLLNLGSKSISHSFAAISKFHYVFK-ILAESEEAQICILRNVWELWQRHPQM 115
           LKI+VF Q  L+LGSKS SH+F  + K+H VFK ++A   E Q  +L  ++++W    Q 
Sbjct: 536 LKINVFTQNCLHLGSKSFSHTFGILRKYHSVFKDLVAGDPERQAAVLNGIFDVWVASDQY 595

Query: 116 VCVLIDKMLKTQIVECSAVATWLFSKEMAPYFTHGCLWEMLHLTIDKMNKHVSKL 170
             V+ +K++   I+E  +V  W+F   M    T   +WE+LH  +  + +   K+
Sbjct: 596 KFVVTEKLVTGLIIEPISVVRWIFGPSMRKELTKIYIWELLHSALRHLKRVQQKI 650


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.326    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,562
Number of Sequences: 52641
Number of extensions: 447696
Number of successful extensions: 1346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 11
length of query: 308
length of database: 24,830,863
effective HSP length: 85
effective length of query: 223
effective length of database: 20,356,378
effective search space: 4539472294
effective search space used: 4539472294
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)