GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001580-TA|BGIBMGA001580-PA|undefined
         (308 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    87   2e-17
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   1.8  
Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical p...    29   5.5  
Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z50028-4|CAL36519.1|  298|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z50028-3|CAL36518.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z50028-1|CAL36517.1|  471|Caenorhabditis elegans Hypothetical pr...    28   7.3  
DQ365983-1|ABD14368.1|  298|Caenorhabditis elegans intraflagella...    28   7.3  
DQ360813-1|ABC88650.1|  320|Caenorhabditis elegans intraflagella...    28   7.3  
DQ360812-1|ABC88649.1|  474|Caenorhabditis elegans intraflagella...    28   7.3  

>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 40/131 (30%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 39  NPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEA- 97
           N LK  ++    P  YN  +  +FV  +L + SK+ SH+F+A+ ++    K + ++ E  
Sbjct: 520 NELKSNDENDELP--YNINEFGLFVMVMLKMASKTYSHNFSALFRYQTTLKTVCDASELY 577

Query: 98  QICILRNVWELWQRHPQMVCVLIDKMLKTQIVECSAVATWLFSKEMAPYFTHGCLWEMLH 157
           Q  +L  ++  W+ + QM+ +L DK+LK Q+++CSAV  WLF ++M        L+E+L+
Sbjct: 578 QEKLLETLYSCWKTNQQMLMILTDKLLKMQVIDCSAVVGWLFDEKMWQEHDRQWLFEVLN 637

Query: 158 LTIDKMNKHVS 168
             ++K+ + ++
Sbjct: 638 QALEKLTRQIN 648



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 253 PHTHWYRATLHRLTQVFLIHHEQVQKYSSTLETLLFTQDLDPHILDVFHQFVAL 306
           P   W R    R   V L H E + K+SS +   +F++  DP I++ F+QF +L
Sbjct: 746 PKFMWLRG---RFCHVLLAHAETLLKHSSNIADEVFSEGTDPSIIECFNQFQSL 796


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 23  NKCTPEEALNVLRDLPNPLKEGEQTANQPTAYNP---LKIDVFVQTLLNLGSKSISHSFA 79
           NKC P++ LNVL  + + ++  +    +   + P    + D F+  LL  G K    +  
Sbjct: 53  NKCKPDQRLNVLYVIDSIVRASKHQLKEKDTFGPRFMKQFDKFLMPLLKCGQKEKMRTVR 112

Query: 80  AISKFHYVFKILAESE 95
            ++ +    K+  ESE
Sbjct: 113 TLNLW-MSNKVFKESE 127


>Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 115 MVCVLIDKMLKTQIVECSA-VATWLFSKE 142
           + C++ID  LKT  ++ +A + TW+  +E
Sbjct: 142 LACIVIDHFLKTSNIQAAARIVTWMIQQE 170


>Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 115 MVCVLIDKMLKTQIVECSA-VATWLFSKE 142
           + C++ID  LKT  ++ +A + TW+  +E
Sbjct: 142 LACIVIDHFLKTSNIQAAARIVTWMIQQE 170


>Z50028-4|CAL36519.1|  298|Caenorhabditis elegans Hypothetical
           protein F46F6.4d protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 33  VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
           ++++ P  L+E  +T   P+A   + ++ +V+  LN+    +  S   I   H +F +L 
Sbjct: 211 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 268

Query: 93  ESEEAQ 98
           E   +Q
Sbjct: 269 EFNNSQ 274


>Z50028-3|CAL36518.1|  320|Caenorhabditis elegans Hypothetical
           protein F46F6.4c protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 33  VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
           ++++ P  L+E  +T   P+A   + ++ +V+  LN+    +  S   I   H +F +L 
Sbjct: 233 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 290

Query: 93  ESEEAQ 98
           E   +Q
Sbjct: 291 EFNNSQ 296


>Z50028-1|CAL36517.1|  471|Caenorhabditis elegans Hypothetical
           protein F46F6.4a protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 33  VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
           ++++ P  L+E  +T   P+A   + ++ +V+  LN+    +  S   I   H +F +L 
Sbjct: 384 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 441

Query: 93  ESEEAQ 98
           E   +Q
Sbjct: 442 EFNNSQ 447


>DQ365983-1|ABD14368.1|  298|Caenorhabditis elegans intraflagellar
           transport proteinvariant c protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 33  VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
           ++++ P  L+E  +T   P+A   + ++ +V+  LN+    +  S   I   H +F +L 
Sbjct: 211 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 268

Query: 93  ESEEAQ 98
           E   +Q
Sbjct: 269 EFNNSQ 274


>DQ360813-1|ABC88650.1|  320|Caenorhabditis elegans intraflagellar
           transport proteinvariant b protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 33  VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
           ++++ P  L+E  +T   P+A   + ++ +V+  LN+    +  S   I   H +F +L 
Sbjct: 233 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 290

Query: 93  ESEEAQ 98
           E   +Q
Sbjct: 291 EFNNSQ 296


>DQ360812-1|ABC88649.1|  474|Caenorhabditis elegans intraflagellar
           transport proteinvariant a protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 33  VLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILA 92
           ++++ P  L+E  +T   P+A   + ++ +V+  LN+    +  S   I   H +F +L 
Sbjct: 387 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKS--RIEALHLMFSLLN 444

Query: 93  ESEEAQ 98
           E   +Q
Sbjct: 445 EFNNSQ 450


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,420,433
Number of Sequences: 27539
Number of extensions: 229534
Number of successful extensions: 665
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 11
length of query: 308
length of database: 12,573,161
effective HSP length: 81
effective length of query: 227
effective length of database: 10,342,502
effective search space: 2347747954
effective search space used: 2347747954
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)