GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001580-TA|BGIBMGA001580-PA|undefined
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...    72   6e-13
At3g04740.1 68416.m00510 expressed protein (SWP1)                      30   2.3  
At2g27490.2 68415.m03323 dephospho-CoA kinase family similar to ...    30   2.3  
At2g27490.1 68415.m03322 dephospho-CoA kinase family similar to ...    30   2.3  
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    29   3.0  
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ...    28   9.1  

>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 59  IDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCV 118
           + + VQTLL++GSKS +H    + ++  VF  L    + Q+ +L  V   W+ + QM  V
Sbjct: 535 LTIVVQTLLDIGSKSFTHLVTVLERYGQVFSKLCPDNDKQVMLLSQVSTYWKNNVQMTAV 594

Query: 119 LIDKMLKTQIVECSAVATWLFSKEMAPYF-THGCLWEMLHLTIDKMNKHVSKL 170
            ID+M+  ++V   A+  W+FS E    F      WE+L   ++K    +S L
Sbjct: 595 AIDRMMGYRLVSNQAIVRWVFSPENVDQFHVSDQPWEILGNALNKTYNRISDL 647


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)

Query: 63  VQTLLNLGSKSISHSFAAISKF 84
           V   +NL SKSI H FAAI KF
Sbjct: 478 VDAFINLRSKSILHFFAAIGKF 499


>At2g27490.2 68415.m03323 dephospho-CoA kinase family similar to
           Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A
           kinase). (Swiss-Prot:Q92BF2) [Listeria innocua];
           contains Pfam profile PF01121: Dephospho-CoA kinase
          Length = 232

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 120 IDKMLKTQIVECSAVATWLFSKEMAPYFTHGCLWEML 156
           +D+    QIV  S     L +K MAPY + G  WE+L
Sbjct: 64  VDRPKLGQIVFSSDSKRQLLNKLMAPYISSGIFWEIL 100


>At2g27490.1 68415.m03322 dephospho-CoA kinase family similar to
           Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A
           kinase). (Swiss-Prot:Q92BF2) [Listeria innocua];
           contains Pfam profile PF01121: Dephospho-CoA kinase
          Length = 232

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 120 IDKMLKTQIVECSAVATWLFSKEMAPYFTHGCLWEML 156
           +D+    QIV  S     L +K MAPY + G  WE+L
Sbjct: 64  VDRPKLGQIVFSSDSKRQLLNKLMAPYISSGIFWEIL 100


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 38  PNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGS 71
           P PL EGE  + +   +N  +  +FVQTL+  G+
Sbjct: 937 PTPLMEGEGRSFRVLGFNQSQRAIFVQTLMRYGA 970


>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 922

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 27  PEEALNVLRDLPNPLKEG-EQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFH 85
           PEE ++V+  + + +K    +T  +  +     ID F +  L     S+    + IS+ H
Sbjct: 25  PEEVMSVISQIISLVKSMVTETETELMSLISETIDFFKEMDLESQPNSLRKLISLISRTH 84

Query: 86  YVFKILAESEEAQICILRNVWELWQRHPQMVCV-LIDKML 124
           +V     E    +  ++  + E W   PQ   + LI K++
Sbjct: 85  FVNSSDWEEPVPESTLMSLIKETWSMKPQPELISLIQKII 124


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,984,631
Number of Sequences: 28952
Number of extensions: 210416
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 6
length of query: 308
length of database: 12,070,560
effective HSP length: 81
effective length of query: 227
effective length of database: 9,725,448
effective search space: 2207676696
effective search space used: 2207676696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)