Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001579-TA|BGIBMGA001579-PA|IPR003890|Initiation factor
eIF-4 gamma, middle
         (492 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    24   2.8  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   8.5  

>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 283 TYPMPRV-IFRMFDYTDCPDG----PVLPGVHSIERFLIEEHLHNIIETYHLERKECAAQ 337
           TY  PR  I+    Y+  P G     VL  +HS    +I E   +   + +  RK  A  
Sbjct: 211 TYRAPRPWIYNETIYSLTPQGRKEQKVLKSLHSFSNNVIAERKKHFSSSSYSSRKRLAML 270

Query: 338 LLCFPYKAK 346
            L   YK++
Sbjct: 271 DLLLKYKSE 279


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 283 TYPMPRV-IFRMFDYTDCPDG----PVLPGVHSIERFLIEEHLHNIIETYHLERKECAAQ 337
           TY  PR  I     Y+  P G     VL  +HS    +I E   +   + +  RK  A  
Sbjct: 211 TYRAPRPWIHNETIYSLTPQGRKEQKVLKSLHSFSNNVIAERKKHFSSSSYSSRKRLAML 270

Query: 338 LLCFPYKAK 346
            L   YK++
Sbjct: 271 DLLLKYKSE 279


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,403
Number of Sequences: 317
Number of extensions: 5784
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 492
length of database: 114,650
effective HSP length: 59
effective length of query: 433
effective length of database: 95,947
effective search space: 41545051
effective search space used: 41545051
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)