Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001579-TA|BGIBMGA001579-PA|IPR003890|Initiation factor
eIF-4 gamma, middle
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)                   163   3e-40
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.9  
SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.9  
SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)                   29   8.5  
SB_49796| Best HMM Match : DUF293 (HMM E-Value=7.6)                    29   8.5  

>SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)
          Length = 525

 Score =  163 bits (396), Expect = 3e-40
 Identities = 75/157 (47%), Positives = 103/157 (65%), Gaps = 18/157 (11%)

Query: 177 SALPWVGRELYEKKESQLDHLLVTIEVFLNKRSKKHWPALKVWSADSPHLQEEYLDCLWS 236
           S +P  G+EL +KK S L+ LL T++ ++++R K H PAL+VWS D  H QEE       
Sbjct: 139 SDVPQTGKELSDKKGSDLERLLTTVDSYISQRKKTHIPALRVWSTDDVHPQEE------- 191

Query: 237 QIKKLKQDNWSEKHIPRPYLAFDSILCEALHHTLPAIQPPPHNDTDTYPMPRVIFRMFDY 296
                      EKHI RPYL+FDS+L +AL HT+P +  PPH D   YP+P +++RMFDY
Sbjct: 192 -----------EKHIRRPYLSFDSVLGDALQHTIPPLTIPPHTDDTVYPLPTIVYRMFDY 240

Query: 297 TDCPDGPVLPGVHSIERFLIEEHLHNIIETYHLERKE 333
           TD P+GP +PG HSIERFL+EE +  +I  ++ +RKE
Sbjct: 241 TDVPEGPAMPGAHSIERFLVEEGIRRVINAHYKDRKE 277



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 449 RLSYHQRIKDMVPESFASFVPPKPEPIYKYSMEGADNKSYT 489
           R SYH  + +++P+ F + +PPKP P Y++S  G   K  T
Sbjct: 302 RFSYHDYLLEILPDDFLNIIPPKPLPSYRFSKGGDIAKQLT 342


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 91  LVGLLNAKNYNFGGEFVDYIVKTFKE-NLKVGKW 123
           L+ L+N +N N  G   +  + TFK+ N+K GKW
Sbjct: 793 LIYLINNENTNRAGPVAEIKLSTFKKRNMKEGKW 826


>SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 86  TIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKWNAAR 127
           T YA  V +L+ KNY   GE +D I+    E +K  K ++A+
Sbjct: 164 TNYAKWVAVLSGKNYQLAGESLDEILNHIDE-IKEAKLDSAK 204


>SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)
          Length = 611

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 273 IQPPPHNDTDTY-PMPRVIFRMFDYTDCPDGPVLPGVH-SIERFLIEEHLHNIIETYHLE 330
           IQP    D  +  P+P +       T  PD P  PG+H   E FL E+ ++   E   + 
Sbjct: 107 IQPETPKDIPSMAPVPEIATSQQPETIQPDEPEQPGIHLKPECFLREKQINFFREELRMV 166

Query: 331 RKE---CAAQLLCFPYKAKIPLEYCIVEVIFAELFNLPKPRYLEIC 373
           +     C+  LL   ++ +     C  +     + N     ++ +C
Sbjct: 167 QSTKVLCSLDLLADEFRKRCGQPGCTEKPTVKHVINGVGATFISVC 212


>SB_49796| Best HMM Match : DUF293 (HMM E-Value=7.6)
          Length = 542

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 273 IQPPPHNDTDTY-PMPRVIFRMFDYTDCPDGPVLPGVH-SIERFLIEEHLHNIIETYHLE 330
           IQP    D  +  P+P +       T  PD P  PG+H   E FL E+ ++   E   + 
Sbjct: 38  IQPETPKDIPSMAPVPEIATSQQPETIQPDEPEQPGIHLKPECFLREKQINFFREELRMV 97

Query: 331 RKE---CAAQLLCFPYKAKIPLEYCIVEVIFAELFNLPKPRYLEIC 373
           +     C+  LL   ++ +     C  +     + N     ++ +C
Sbjct: 98  QSTKVLCSLDLLADEFRKRCGQPGCTEKPTVKHVINGVGATFISVC 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,471,585
Number of Sequences: 59808
Number of extensions: 746762
Number of successful extensions: 1759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1753
Number of HSP's gapped (non-prelim): 10
length of query: 492
length of database: 16,821,457
effective HSP length: 85
effective length of query: 407
effective length of database: 11,737,777
effective search space: 4777275239
effective search space used: 4777275239
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)