Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001579-TA|BGIBMGA001579-PA|IPR003890|Initiation factor
eIF-4 gamma, middle
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...   200   1e-51
At4g34400.1 68417.m04886 transcriptional factor B3 family protei...    29   5.3  
At4g13420.1 68417.m02095 potassium transporter (HAK5) identical ...    29   5.3  
At1g03940.1 68414.m00379 transferase family protein similar to a...    29   5.3  
At3g50380.1 68416.m05511 expressed protein                             29   9.3  
At3g29635.1 68416.m03729 transferase family protein similar to a...    29   9.3  

>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score =  200 bits (489), Expect = 1e-51
 Identities = 134/465 (28%), Positives = 226/465 (48%), Gaps = 38/465 (8%)

Query: 58  VLEADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKEN 117
           V+  ++     ++L  L  CA ++P K  +Y TL+GLLN +N +F  + V+ +   F+  
Sbjct: 34  VIRREIERSGDQVLPFLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHANFQVA 93

Query: 118 LKVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSA-----NEDGVP--HVRRDW 170
           L  G  N+ R  LRF+  L+                   SA      E G P    + D+
Sbjct: 94  LDSGNCNSIRILLRFMTSLLCSKVIQPASLIVVFETLLSSAATTVDEEKGNPSWQPQADF 153

Query: 171 FVFAVLSALPWVGRELYEKKESQLDHLLVTIEVFLNKRSKKHWPALKVW---SADSPHLQ 227
           +V  +LS+LPW G EL E+   +++ +LV I+ +L+ R       L  +     +S   +
Sbjct: 154 YVICILSSLPWGGSELAEQVPDEIERVLVGIQAYLSIRKNSSTSGLNFFHNGEFESSLAE 213

Query: 228 EEYLDCLWSQIKKLKQDNWSEKHIPRPYLAFDSILCEALHHTLPAI----QP-PPHNDTD 282
           +++++ L  +I+ L  + W  + +PRP+L+F++ L     H L  I    QP PP + + 
Sbjct: 214 KDFVEDLLDRIQSLASNGWKLESVPRPHLSFEAQLVAGKFHELRPIKCMEQPSPPSDHSR 273

Query: 283 TYP-------MPRVIFRMFDYTDCPDGPVLPGVHSIERFLIEEHLHNIIETYHLERKECA 335
            Y        + R   R+      P    +  V  I+RF++EE+L +++   +  RKECA
Sbjct: 274 AYSGKQKHDALTRYPQRIRRLNIFPANK-MEDVQPIDRFVVEEYLLDVLFYLNGCRKECA 332

Query: 336 AQLLCFPYKAKIPLEYCIVEVIFAELFNLPKPRYLEICYGSILIELCKLQPSTMPQVLAQ 395
           + +   P   +   EY + E +F+++  LP+P +  + Y  ++++LCK  P   P V+A 
Sbjct: 333 SYMANLPVTFRY--EYLMAETLFSQILLLPQPPFKTLYYTLVIMDLCKALPGAFPAVVAG 390

Query: 396 ATEILFMRIDTMNVACFDRFANWFAYHLSNFQYRWSWEDWEACLQLDPEHPK-------- 447
           A   LF +I  +++    R   WF++HLSNFQ+ W WE+W   L L    PK        
Sbjct: 391 AVRALFEKISDLDMESRTRLILWFSHHLSNFQFIWPWEEWAFVLDLPKWAPKRVFVQEIL 450

Query: 448 ---PRLSYHQRIKDMVPESFA--SFVPPKPEPIYKYSMEGADNKS 487
               RLSY  +IK  +  + A    +PPK  P + YS+E    K+
Sbjct: 451 QREVRLSYWDKIKQSIENATALEELLPPKAGPNFMYSLEEGKEKT 495


>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 389

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 84  KCTIYATLVGLLNAKNYNFG-GEFVDYIVKTFKENLKVGKWNAARYCLR 131
           K  +Y  LV     K+Y    G++V+YI +  K + K  KW   R C++
Sbjct: 300 KNRLYELLVHAQLVKDYCLRFGDYVNYIDRFGKLSAKTAKWKDQRVCIK 348


>At4g13420.1 68417.m02095 potassium transporter (HAK5) identical to
           K+ transporter HAK5 [Arabidopsis thaliana]
           gi|7108597|gb|AAF36490; similar to high-affinity
           potassium transporter AtKUP1p [Arabidopsis thaliana]
           gi|2688979|gb|AAB88901; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 785

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 61  ADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYI 110
           ADL  F V+ ++I   C +  P   TIY      L    YN    F D I
Sbjct: 316 ADLGHFSVRAVQISFSC-VAYPALVTIYCGQAAYLTKHTYNVSNTFYDSI 364


>At1g03940.1 68414.m00379 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 469

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 406 TMNVACFDRFANWFAYHLSNFQYRWSWED-WEACLQLDPEHPKPRLSYHQRIKDMVPESF 464
           T+ +  FD  A W +  L++  + +S+++  E+ LQ    + K  LS    ++   P + 
Sbjct: 27  TLPLTFFD--APWLSLPLADSLFFFSYQNSTESFLQDFVPNLKHSLSI--TLQHFFPYAG 82

Query: 465 ASFVPPKPEPIYKYSMEGADNKSYT 489
              +PP+P+P Y +  +G D+  +T
Sbjct: 83  KLIIPPRPDPPYLHYNDGQDSLVFT 107


>At3g50380.1 68416.m05511 expressed protein
          Length = 3071

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 219 WSADSPHLQEEYLDCLWSQIKKLKQDNWSEKHIPRPYLAFDSILCEAL 266
           W++ S HL+    DC +    K+   NWS+  + RP     S L EA+
Sbjct: 824 WNSLSSHLRFSGFDCSFC---KMAVKNWSQVFVVRPVTICFSSLSEAI 868


>At3g29635.1 68416.m03729 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 458

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 445 HPKPRLSYHQRIKDMVPESFASFVPPKPE 473
           HP  R+ +++ IKD   ESF S + PK E
Sbjct: 40  HPTERVIFYKLIKDSSLESFLSVILPKLE 68


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,295,812
Number of Sequences: 28952
Number of extensions: 543801
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1085
Number of HSP's gapped (non-prelim): 7
length of query: 492
length of database: 12,070,560
effective HSP length: 84
effective length of query: 408
effective length of database: 9,638,592
effective search space: 3932545536
effective search space used: 3932545536
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)