Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001579-TA|BGIBMGA001579-PA|IPR003890|Initiation factor
eIF-4 gamma, middle
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 97 5e-21
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 33 0.068
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 29 1.5
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 28 2.6
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 4.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 4.5
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 4.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 7.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 7.8
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 7.8
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 97.1 bits (231), Expect = 5e-21
Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 43/364 (11%)
Query: 156 DSANEDGVPHVRRDWFVFAVLSALPW-VGRELYEKKESQLDHLLVTIEVFLNKRSKKHWP 214
D+ +++ P V D F+ +L LP+ + K+ + +L E+++ R +K
Sbjct: 161 DAISKETKPSVWGDNFLRIILINLPYFIAANNDLGKKDFANEILDQCEIYV--RHRKSSI 218
Query: 215 ALKVWSADSPHLQEEYLDCLWSQIKKLKQDNWSEKHIPRPYLAFDS--ILCEALHHTLP- 271
L + +L EE LD L+ Q+ ++++++ +I +P+ F+S + + ++P
Sbjct: 219 TLSNPLSIHDNLSEEELDLLYKQLILSRENDFTFPYISQPWKFFESDFVHIVPVSPSIPE 278
Query: 272 -AIQPPPH-NDTDTYPMPRVIFRMFDYTDCPDGPVLPGVHSIERFLIEEHLHNIIETYHL 329
QP P N+ ++ +F F+ PD + SI R + + + N +E +
Sbjct: 279 WTFQPTPQQNELPSFKRFFELFNNFEIRTTPDASDVAA--SIFRDISVDVI-NHLEFNRV 335
Query: 330 ERKECAAQL-LCFPYKA---------KIP----------LEYCIVEVIFAELFNLPKPRY 369
E + L + F YK ++P E IVE + EL Y
Sbjct: 336 EAAQVLTDLDVYFTYKTFALRGTPVNELPNLDPSESRWKAEDIIVEAVLGELLGSQNTTY 395
Query: 370 LEICYGSILIELCKLQPSTMPQVLAQATEILFMRIDTMNVACFDRFANWFAYHLSNFQYR 429
+ Y S+LIE C++ P + + +++ + + DRF +WF++HLSNF +
Sbjct: 396 KPVYYHSLLIECCRIAPKILAPTFGRVIRLMYTMSSDLPLQTLDRFIDWFSHHLSNFNFH 455
Query: 430 WSWEDWEACLQLDPEHPKP-----------RLSYHQRIKDMVPESFASFVPPKPE-PIYK 477
W W +W ++LD HPK LSY+ RI D +PE + +P P +
Sbjct: 456 WKWNEWIPDVELDDLHPKKVFMRETITRELILSYYTRISDSLPEELRCLLGEQPSGPNFV 515
Query: 478 YSME 481
Y E
Sbjct: 516 YENE 519
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 33.5 bits (73), Expect = 0.068
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 240 KLKQDNWSEKHIPRPYLAFDSILCEALHHTLPAIQPPP---HNDTDTYPMPRVIFRMFDY 296
KL+ N EK I ++ +H +LPA+Q PP H++TD Y + + +
Sbjct: 201 KLEHKNSIEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETDLY-ADEELDSILMH 259
Query: 297 TDCPDGPVLPGVHSIERFL 315
+ P P P V E L
Sbjct: 260 HERPPIPESPRVEEFEELL 278
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 374 YGSILIELCKLQPSTMPQVLAQATEILFMRIDTMNVACFDRFANWFAY-HLSNFQYRWSW 432
YG ++ + +P L +ILF+ +DT + + A Y H+ N Q + +
Sbjct: 514 YGRYNPKVAPIHNINLPAALLSRFDILFLILDTPSRETDEHLAQHVTYVHMHNEQPKMDF 573
Query: 433 EDWEACLQLDPEHPKPRLSYHQRIKDMVPESFASFV 468
E LDP + +S ++ + +VP+ +V
Sbjct: 574 E------PLDPNMIRHYISSARQYRPVVPKDVCDYV 603
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 443 PEHPKPRLSYHQRIKDMVPESFASFVPPKPE-PIYKYSMEGADNK 486
P++ PR+S R + + SFA +PPKP P++K + K
Sbjct: 143 PKYFNPRISCESRTYEYLIPSFA-LLPPKPSCPLFKKMQKNLSRK 186
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 3 RRRGHDDEEGYERLHRKRRRVSENQEIEDRLESL 36
RR+ +D+ EGY+ L + E+ E E+ L+ L
Sbjct: 677 RRKENDNHEGYDLLPNSSTKGEESAENENELDDL 710
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 2 NRRRGHDDEEGYERLHRKRRRVSENQEIEDRLESLILRV 40
NRRR +E+ R ++ ++S+N+E ++S++ ++
Sbjct: 22 NRRRQFQEEDQLRRNNKSSNKLSQNEEDAKNMDSVVQKL 60
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.5 bits (58), Expect = 4.5
Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 10/185 (5%)
Query: 307 GVHSIERFLIEEHLHNIIETYHLERKECAAQLLCFPYKAKIPLEYCIVEVIFAELFNLPK 366
GV+S + F++ L + + ++ + Q L K+ L+Y + + A PK
Sbjct: 84 GVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLILAKSDA-LDYVLEGLFSAARVKHPK 142
Query: 367 PRYLEICYGSILIE---LCKLQP----STMPQVLAQATEILFMRIDTMNVACFDRFANWF 419
I + L+E + L P +P + AQ+ + + +++ + N F
Sbjct: 143 QAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKNIRQEASNLSITLYAWVGNAF 202
Query: 420 AYHLSNFQYRWSWEDWEACLQLDPEHPKP--RLSYHQRIKDMVPESFASFVPPKPEPIYK 477
H+ + D EA Q +S +++V SF+S PKP K
Sbjct: 203 KTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNTQEVVLPSFSSNAKPKPHLSSK 262
Query: 478 YSMEG 482
S +G
Sbjct: 263 SSSQG 267
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 443 PEHPKPRLSYHQRIKDMVPESFASFVPPKP 472
PE PKP ++ H R SF+S PP+P
Sbjct: 1600 PETPKPAIATHSRYN----ASFSSSPPPQP 1625
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 443 PEHPKPRLSYHQRIKDMVPESFASFVPPKP 472
PE PKP ++ H R SF+S PP+P
Sbjct: 1600 PETPKPAIATHSRYN----ASFSSSPPPQP 1625
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 7.8
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 184 RELYEKKESQLDHLLVTIEVFLNKRSKKHWPALKVWSADSPHLQEEYLDCLWSQIKKLKQ 243
R +Y K ++D +V +V LN K W L V S D HL ++ + L K + +
Sbjct: 435 RLIYAAKTKEVDTSIVQPKV-LNDLVTKIWKWLLVISVDQYHLATKFANYLKEYQKTVNE 493
Query: 244 DNWSEKHIPRPYLAFDSILCEAL 266
P S +AL
Sbjct: 494 GTAESTWFKGPLRPVSSTTLQAL 516
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.139 0.449
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,655
Number of Sequences: 5004
Number of extensions: 105733
Number of successful extensions: 254
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 10
length of query: 492
length of database: 2,362,478
effective HSP length: 76
effective length of query: 416
effective length of database: 1,982,174
effective search space: 824584384
effective search space used: 824584384
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
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