Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001579-TA|BGIBMGA001579-PA|IPR003890|Initiation factor
eIF-4 gamma, middle
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 130 2e-30
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 32 1.2
02_02_0275 + 8478374-8478706 30 3.6
10_01_0289 + 2995946-2996099,2996248-2996783 29 6.4
12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912... 29 8.4
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 29 8.4
08_02_0854 - 21905054-21906308,21906396-21907300 29 8.4
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 29 8.4
>03_02_0984 +
12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 130 bits (315), Expect = 2e-30
Identities = 125/499 (25%), Positives = 213/499 (42%), Gaps = 90/499 (18%)
Query: 74 LTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKWNAARYCLRFI 133
L CA ++P K + L+GL+N +N +F VD ++ L + R LRF+
Sbjct: 31 LLQCADQLPHKIPFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNENRDRIRILLRFL 90
Query: 134 ADLVNCHXXXXXXXXXXXXXXXDSA-----NEDGVP--HVRRDWFVFAVLSALPWVGREL 186
L+ SA E G P R D++V+ +L++LPW G EL
Sbjct: 91 CGLMCSKVVLPNSIIETFEALLSSAATILDEETGNPSWQPRADFYVYCILASLPWGGSEL 150
Query: 187 YEKKESQLDHLLVTIEVFLNKRSKKHWPALKVWSAD---SPHLQEEYLDCLWSQIKKLKQ 243
+E+ + + +LV I+ +++ R A V+ D SP+ ++++++ LW +I+ L +
Sbjct: 151 FEQVPDEFERVLVGIQSYISIRRHFDDIAFSVFETDEGNSPN-KKDFIEDLWERIQVLSR 209
Query: 244 DNWSEKHIPRPYLAFDSILCEALHHTLPAIQ--PPPHNDTDT--------------YPMP 287
+ W K +P+P+L+F++ L + H I PP + + + YP
Sbjct: 210 NGWKVKSVPKPHLSFEAQLVAGVSHRFSPISCPPPTISQSSSEIVKGQEKHEADLKYPQR 269
Query: 288 RVIFRMF-----DYTDCPDGPVLPGVHSIERFLIEEHLHNIIETYHL--ERKECAAQLLC 340
+F + D G H + + I ++ RKECA L+
Sbjct: 270 LRRLHIFPTNKAELFHLSDKNSHTGRHLLSYMTSHVKMDFIFSSFKNGDSRKECAFYLVS 329
Query: 341 FPYKAKIPLEYCIVEVIFAELFNLPKPRYLEICYGSILIELCKLQ---------PSTMPQ 391
P + EY + E IF++L LP P + I Y ++I+LCK+ ++MPQ
Sbjct: 330 LPVPFRY--EYLMAETIFSQLLLLPNPPFRPIYYTLVIIDLCKIMAVLMVYSTCQTSMPQ 387
Query: 392 VLAQATEILFMRIDTMNV--------------------ACFDRFAN-----------WFA 420
V ++ ++ T+ A FDR +N WF+
Sbjct: 388 VWLATVFVVPKKLATLVANFGLQALPGAFPSVVVGAVHALFDRISNMDMECRTRLILWFS 447
Query: 421 YHLSNFQYRWSWEDWEACLQLDPEHPKP-----------RLSYHQRIKDMVPES--FASF 467
+HLSNFQ+ W W++W L P+ RLSY +IK + ++
Sbjct: 448 HHLSNFQFIWPWQEWAYVKDLPKWAPQRVFVQEVLEREIRLSYFDKIKQSIEDAVELEEL 507
Query: 468 VPPKPEPIYKY-SMEGADN 485
+PPK P ++Y S EG ++
Sbjct: 508 LPPKAGPNFRYHSDEGKES 526
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 221 ADSPHLQEEYLDCLWSQIKKLKQDNWSEKHIPRPYLAFDSILC 263
+D P++Q+ L C W+ K+L + + + + +LAFD C
Sbjct: 158 SDPPNMQQFCLRCSWTNPKRLAKPSLAIASLSHQHLAFDKTRC 200
>02_02_0275 + 8478374-8478706
Length = 110
Score = 30.3 bits (65), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 448 PRLSYHQRIKDMVPESFASFVPPKPEP 474
P L +H+R+ DMV + S PP+P P
Sbjct: 35 PVLHHHRRLHDMVAAAVVSQPPPRPPP 61
>10_01_0289 + 2995946-2996099,2996248-2996783
Length = 229
Score = 29.5 bits (63), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 442 DPEHPKPRLSYHQRIKDMVPESFASFVPPKPEP 474
+PEHP +H++ KD VPPKPEP
Sbjct: 173 EPEHPILD-HFHKKEKDFFDHFHKKPVPPKPEP 204
>12_02_0928 +
24488891-24489675,24490369-24490421,24490479-24491229,
24491322-24491533,24491780-24492570,24492686-24492784
Length = 896
Score = 29.1 bits (62), Expect = 8.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 318 EHLHNIIETYHLERKECAAQLLCFPYKAKIPLEYCIVEVIFAELFNLPKP 367
E + IE + +EC L CFP KIPL+ I I+ E+ +L +P
Sbjct: 461 ERMAASIECLSGKVRECFLDLGCFPEDKKIPLDVLI--NIWMEIHDLDEP 508
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 391 QVLAQATEILFMRIDTMNVACFDRFANWFAYHLSNFQYRWSWEDWEACLQ 440
Q+LA+ T I + + F++ + + LS+ + WS W+ACL+
Sbjct: 139 QLLAEHTIISEAFLSAATYSWFEKEKDLLSSQLSSLKRIWSQPQWQACLK 188
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 29.1 bits (62), Expect = 8.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 442 DPEHPKPRLSYHQRIKDMVPESFASFVPPKPE-PIYKYSMEGADNKSY 488
DPE KP +Y I+D V ++A P +P+ I+ +G + +S+
Sbjct: 43 DPELRKPIEAYPPEIRDQVKRAYALSGPTQPDITIFPRKWQGGEWRSF 90
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 29.1 bits (62), Expect = 8.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 194 LDHLLVTIEVFLNKRSKKHWPALKVWSADSPHLQEEYLDCL 234
LD LVT EV + SK W V D H Q+ + CL
Sbjct: 836 LDDTLVTCEVLIGFPSKARWNIPIVMLEDFAHDQQNLIACL 876
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.139 0.449
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,564
Number of Sequences: 37544
Number of extensions: 670781
Number of successful extensions: 1332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 11
length of query: 492
length of database: 14,793,348
effective HSP length: 85
effective length of query: 407
effective length of database: 11,602,108
effective search space: 4722057956
effective search space used: 4722057956
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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