GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001579-TA|BGIBMGA001579-PA|IPR003890|Initiation factor
eIF-4 gamma, middle
         (492 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...   335   5e-92
Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical pr...    38   0.012
Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical pr...    31   1.8  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    31   1.8  
AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical ...    31   1.8  
Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical pr...    30   4.3  
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    30   4.3  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    29   7.5  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    29   7.5  

>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score =  335 bits (823), Expect = 5e-92
 Identities = 168/446 (37%), Positives = 248/446 (55%), Gaps = 6/446 (1%)

Query: 1   MNRRRGHDDEEGYERLHRKRRRVSENQEIEDRLESLILRVGXXXXXXXXXXXXXXXXVLE 60
           M+RRR  DDE+  +   ++RR     +++E +L+ +I +VG                 L 
Sbjct: 1   MSRRRQFDDEDEVQM--KRRRGAPLIEDVEKKLQGVIGKVGENTGSSIECNLDKLTAFLH 58

Query: 61  ADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKV 120
            DL  +R  I+ I+  CAI +P + T+Y TLVGLLN+KN+NFGG+ V+ ++   ++ L  
Sbjct: 59  DDLEKYRASIIDIIAGCAIYLPNRVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSK 118

Query: 121 GKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDWFVFAVLSALP 180
            K+  A+    F+ DL N                  +A E+ +P VR D+++  VL  LP
Sbjct: 119 QKYQEAQNLAIFLCDLGNSGVLTAQSIGEYLESFIAAAFEENMPQVRNDYYIQTVLRCLP 178

Query: 181 WVGRELYEKKESQLDHLLVTIEVFLNKRSKKHWPALKVWSADSP-HLQEEYLDCLWSQIK 239
           W+G+EL EK   Q++++   I  +L  R+K H   L+VW   S    QE+YL+ L +QI+
Sbjct: 179 WIGKELTEKAPEQMENIGEAIGKYLELRNKNHVALLQVWREGSTDQKQEDYLESLSAQIE 238

Query: 240 KLKQDNWSEKHIPRPYLAFDSILCEALHHTLPAIQPPPHNDTDTYPMPRVIFRMFDYTDC 299
            L+  +W E HIPR Y  F++ L +AL H LP+ Q P H     YP P V+FR+F   DC
Sbjct: 239 ALRNADWVENHIPRHYSGFETTLQDALQHNLPSFQSPEHTSDMIYPYPLVVFRLFQDADC 298

Query: 300 P--DGPVLPGVHSIERFLIEEHLHNIIETYHLERKECAAQLLCFPYK-AKIPLEYCIVEV 356
                  LPG  SI+RFL E  +  IIE     RK CA +LL F  +   +P+ + I E 
Sbjct: 299 SAFSSKPLPGDSSIDRFLFEGEIAWIIEKNQFNRKACARELLAFAEENPSVPIGFLIFET 358

Query: 357 IFAELFNLPKPRYLEICYGSILIELCKLQPSTMPQVLAQATEILFMRIDTMNVACFDRFA 416
           IF ++  LP   Y  I + S+++EL KL+P   PQ+L Q  E ++ R D+M   C DR  
Sbjct: 359 IFGQMLRLPHAPYPAIFHCSLVLELLKLKPDDYPQILVQTVECIYRRADSMQPVCIDRMV 418

Query: 417 NWFAYHLSNFQYRWSWEDWEACLQLD 442
           +WF++HLSNFQYR++W DW+ CL  D
Sbjct: 419 DWFSFHLSNFQYRYTWTDWKDCLNKD 444


>Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical
           protein F53F1.2 protein.
          Length = 297

 Score = 38.3 bits (85), Expect = 0.012
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 276 PPHNDTDTYPMPRVIFRMFDYTDCPDGPVLPGVHSIERFLIE-EHLHNIIETYHLERKEC 334
           P  ND+D   +    +R   Y    +      V SI     E  HL  + +TY  +   C
Sbjct: 122 PKPNDSDNDDVNNAEYRKIAYEVLEEAKAAGKVRSIGVSNYEIVHLEEL-KTY-AKVPPC 179

Query: 335 AAQLLCFPYKAKIPLE-YCIVEVIFAELFNLPKPRYLEICYGSILIELCKLQPSTMPQVL 393
           A QL   P+ A+IPL+ YC  + IF + F+       ++    +++EL K   +++P VL
Sbjct: 180 ANQLEYHPHFARIPLQKYCKEKNIFFQAFSSLARHEPKLIEDPVVVELAKKHNTSVPLVL 239


>Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical
           protein F49C12.5b protein.
          Length = 480

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 342 PYKAKIPLEYCIVEVIFAELFNLPKPRYLEICYGSILIELCKLQPSTMPQVLAQATEILF 401
           PY    P + C +  +FA +  LP  + +++  G+ L E+   +PS++ + +   T  LF
Sbjct: 79  PYSRVTPHDVCQIITVFATVQLLPNVKSIKMVSGNELTEIPFSKPSSLKRDVVVCTSPLF 138

Query: 402 M 402
           +
Sbjct: 139 V 139


>Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical
           protein F49C12.5a protein.
          Length = 507

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 342 PYKAKIPLEYCIVEVIFAELFNLPKPRYLEICYGSILIELCKLQPSTMPQVLAQATEILF 401
           PY    P + C +  +FA +  LP  + +++  G+ L E+   +PS++ + +   T  LF
Sbjct: 106 PYSRVTPHDVCQIITVFATVQLLPNVKSIKMVSGNELTEIPFSKPSSLKRDVVVCTSPLF 165

Query: 402 M 402
           +
Sbjct: 166 V 166


>U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical
           protein ZC53.1 protein.
          Length = 448

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 444 EHPKPRLSYHQRIKDMVPESFASFVPP 470
           E PKP+ S H+  +D  PE+F S  PP
Sbjct: 287 EGPKPKHSTHETPEDAKPEAFTSVKPP 313


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 176  LSALPWVGRELYEKKE-----SQLDHLLVTIEVFLNKRSKKHWPALKVWSA-----DSPH 225
            LS+ PW+ + L E  +     + +D ++  I   L K +K+H       SA     DS  
Sbjct: 1994 LSSSPWILQNLLENLKGFFGAAAVDSMIKRIPANLLKSNKRHLIDSSFSSASRTDVDSKF 2053

Query: 226  LQEEYLDCLWSQIKKLKQDNWSEKHIPRPYLAFDSILCEALHHTLPAI 273
             +    + +   I K+  D+ S +H+      ++   C+   + LP I
Sbjct: 2054 SRAVLFEWILQMISKIPADHGSAEHLSSTMTKYEIATCDVTFNNLPQI 2101


>AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.7 protein.
          Length = 385

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 445 HPKPRLSYHQRIKDMVPESFASFVPPKPEPIYKYSMEGADN 485
           HPK R+  H  + D+  +  +SF PP P P+ K + +G D+
Sbjct: 318 HPKRRIG-HVAL-DLNIDKNSSFAPPPPPPLQKINNDGVDD 356


>Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B5.7 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 438 CLQLDPEHPKP--RLSYHQRIKDMVPESFASFVPPKPEPIYKYSMEGADNKSYTTLN 492
           CL+   + PK   R+S    +KD+VP SF+  +P   EP         D+   + +N
Sbjct: 71  CLEPIEQPPKKMIRISPTPPVKDLVPSSFSHIIPKIEEPASDSQTPSLDSMLESNVN 127


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 98  KNYNFGGEFVDYIVKTFKENLKVGKWNAARYCLRFIADLVN 138
           +N+NF  + VD + K  K   + G +  A  CL +  +LVN
Sbjct: 119 QNHNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVN 159


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Hypothetical
           protein W01C8.4b protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 188 EKKESQLDHLL-VTIEVFLNKRSKKHWPALKVWSADSPHLQEEYLDCLWSQIKKLKQDNW 246
           + K+S++  L  +T+    N  +K  +  L+  S D   ++ + L    +Q+K  K+ NW
Sbjct: 49  KNKKSRVQGLFSITLSRHTNALNKIDYSDLEQNSDDLIVIKRKKLKIHGTQLKMFKEQNW 108

Query: 247 SEKHI 251
           S +HI
Sbjct: 109 STEHI 113


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 4   RRGHDDEEGYERLHRKRRRVSENQEIEDRLESL 36
           ++ H++EE  + L  ++RRV E ++IE  L  L
Sbjct: 71  KKRHEEEEAAKLLDYEQRRVLEKEQIEQELREL 103


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 4   RRGHDDEEGYERLHRKRRRVSENQEIEDRLESL 36
           ++ H++EE  + L  ++RRV E ++IE  L  L
Sbjct: 71  KKRHEEEEAAKLLDYEQRRVLEKEQIEQELREL 103


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,958,722
Number of Sequences: 27539
Number of extensions: 584777
Number of successful extensions: 1291
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 13
length of query: 492
length of database: 12,573,161
effective HSP length: 84
effective length of query: 408
effective length of database: 10,259,885
effective search space: 4186033080
effective search space used: 4186033080
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)