GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001579-TA|BGIBMGA001579-PA|IPR003890|Initiation factor
eIF-4 gamma, middle
         (492 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 82  PEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTF 114
           P    ++ +L   LN KN+N   +   Y+++ F
Sbjct: 278 PSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFF 310


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 349 LEYCIVEVIFAELFNLPKP 367
           +EYC+V ++  +    PKP
Sbjct: 323 MEYCLVNIVLGDSDTPPKP 341


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)

Query: 93  GLLNAKNYNFGGEFVDYIVKTFKENLKVGKWN 124
           G   A  YNF    V Y VK F     V  +N
Sbjct: 131 GNSRANTYNFDYPQVPYTVKNFHPRCAVNNYN 162


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,135
Number of Sequences: 429
Number of extensions: 7680
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 3
length of query: 492
length of database: 140,377
effective HSP length: 60
effective length of query: 432
effective length of database: 114,637
effective search space: 49523184
effective search space used: 49523184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)