GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001578-TA|BGIBMGA001578-PA|undefined
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    63   3e-11
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    32   0.095
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    26   4.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   6.3  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 51  SSIVLVQLFAFWLFLLMISVFLVLTRTKSAV---------KVNTVTRKSFHLLASLVFMS 101
           +S+  +++  +W+  L   +F++L   ++           +V    RK++H L   +F+ 
Sbjct: 223 NSLTRIKIIIWWIICLGCFIFILLRSNRNNPLGKYFTTEDEVLNFRRKTYHALVVFLFLP 282

Query: 102 GIIYDVYLTSXXXXXXXXXXXXVEALRKLNITPISEALQSAFDVYSDEKDI-GSFAMTPI 160
               D +               VE +R L + P  + +      Y+D +D  G   ++ I
Sbjct: 283 VCCLDPHFLHLSFSGVLFIFLFVEGIRILRLKPFGKMIHEFLWEYTDNRDHKGPLIISHI 342

Query: 161 YLYVGLACPLILVPSYEG--TTLELLSGVLATGVGDTAASWFGSKYG 205
           YL +G A P+ L  + +G   ++ELL GVL  G GD+ AS  G ++G
Sbjct: 343 YLLIGCAIPIWLSNALKGPVASVELLVGVLCLGCGDSMASIIGKRFG 389



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/33 (27%), Positives = 22/33 (66%)

Query: 221 RTMLAASISSVVEAKTDQVDNLILPLVTLLVFQ 253
           +T+  +  ++++E  + + DNLILP+   +++Q
Sbjct: 430 KTLFMSLCTAILEGVSTENDNLILPMYMWVLYQ 462


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 136 SEALQSAFDVYSDEKDIGSFAMTPIYL--YVGLAC----PLILVPSYEG 178
           S+ + S +D Y D+K +GS  +TPI+L  YV  A     PL L  S EG
Sbjct: 233 SQMVVSVYDKYEDDKFLGSVKITPIFLHEYVQEAWYKLEPLDLTKSLEG 281


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 80  AVKVNTVTRKSFHLLASLVFMSGIIYDVYLTS 111
           +VK+N +  +SF+LL +  F+S  +++V+L S
Sbjct: 280 SVKINLIRERSFNLLKN--FVSASLFNVFLFS 309


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 36  TMNILHDPNEDMNLISSIVLVQLFAFWLFLLMISVFLVLTRTKSAVKVNTVTRKSFHLLA 95
           T  +  D  +  ++  +++L +LF   L    + +F+   R  S +  N + R+SF  + 
Sbjct: 190 TTVLCFDELQVTDVADALLLRRLFEA-LMKYGVVIFITSNRAPSDLYKNGIQRESF--IP 246

Query: 96  SLVFMSGIIYDVYLTSXXXXXXXXXXXXVEALRKLNITPISEALQSAFDVYSDEKD 151
            +  +   +  + L S               L   N   + +AL++ F  Y+DEKD
Sbjct: 247 CIKLLEHRLQVICLDSPNDYRRLKSKTEDTYLYPANSPEVKKALENWFLCYADEKD 302


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 131  NITPISEALQSAFDVYSDEKDIGSFAMTPIYLY 163
            ++T ++E L+  F+VYS++  +    + P  LY
Sbjct: 1442 DVTQLTEVLELVFNVYSEKTPVFFTHLVPYRLY 1474


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 20   IVTQGLTLFTIAVIGRTMNILHDPNEDMNLISSIVLV-QLFAFWLFLLMIS 69
            I   G  +FT A+      ++    + +N+IS IVLV    A++LF + IS
Sbjct: 1415 IFAYGQLIFTAAIFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLFNIFIS 1465


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 988,497
Number of Sequences: 5004
Number of extensions: 35243
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 8
length of query: 259
length of database: 2,362,478
effective HSP length: 71
effective length of query: 188
effective length of database: 2,007,194
effective search space: 377352472
effective search space used: 377352472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)