GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001578-TA|BGIBMGA001578-PA|undefined
         (259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255...    78   8e-15
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259...    75   4e-14
11_01_0749 - 6305087-6307522                                           29   4.9  
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    29   4.9  
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    29   4.9  

>02_01_0354 +
           2551675-2551874,2552721-2552833,2552982-2553170,
           2553667-2553737,2553835-2553909,2553983-2554209,
           2554361-2554550,2554627-2554692,2554807-2554895,
           2554990-2555104,2555190-2555241,2555317-2555417,
           2555516-2555629
          Length = 533

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 38/153 (24%), Positives = 71/153 (46%)

Query: 58  LFAFWLFLLMISVFLVLTRTKSAVKVNTVTRKSFHLLASLVFMSGIIYDVYLTSXXXXXX 117
           L A+W+F++ +S+    + +K +     + RK +HL+A L+F   +I+            
Sbjct: 307 LCAYWIFVIYVSIRRFYSISKQSKTERILLRKYYHLVAVLIFSPAVIFQPDFLDLAFGAA 366

Query: 118 XXXXXXVEALRKLNITPISEALQSAFDVYSDEKDIGSFAMTPIYLYVGLACPLILVPSYE 177
                 +E +R   I P+   +      ++D +D     ++   L +G A P  +   + 
Sbjct: 367 FAVFLILEMVRVWEIYPLGHIVHQFMSAFTDHRDSEILIVSHFSLLLGCALPKWMSSGFN 426

Query: 178 GTTLELLSGVLATGVGDTAASWFGSKYGTKKWT 210
              L   +G+L+ G+GDT AS  G KYG  +W+
Sbjct: 427 DRPLTPFAGILSLGIGDTMASMIGYKYGVLRWS 459


>02_01_0360 -
           2594534-2594601,2594778-2594829,2594915-2595029,
           2595124-2595212,2595326-2595391,2595468-2595657,
           2595811-2596037,2596111-2596185,2596283-2596354,
           2596507-2596577,2596848-2597036,2597186-2597298,
           2598063-2598268
          Length = 510

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 38/153 (24%), Positives = 70/153 (45%)

Query: 58  LFAFWLFLLMISVFLVLTRTKSAVKVNTVTRKSFHLLASLVFMSGIIYDVYLTSXXXXXX 117
           L A W+F++ +S+    + +K +     + RK +HL+A L+F   +I+            
Sbjct: 333 LCANWIFVIYVSIRRFYSISKQSKTERILLRKYYHLVAVLIFSPAVIFQPDFLDLAFGAA 392

Query: 118 XXXXXXVEALRKLNITPISEALQSAFDVYSDEKDIGSFAMTPIYLYVGLACPLILVPSYE 177
                 +E +R   I P+   +      ++D +D     ++   L +G A P  +   + 
Sbjct: 393 FAVFLILEMVRVWEIYPLGHIVHQFMSAFTDHRDSEILIVSHFSLLLGCALPKWMSSGFN 452

Query: 178 GTTLELLSGVLATGVGDTAASWFGSKYGTKKWT 210
              L   +G+L+ G+GDT AS  G KYG  +W+
Sbjct: 453 DRPLTPFAGILSLGIGDTMASMIGYKYGVLRWS 485


>11_01_0749 - 6305087-6307522
          Length = 811

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 137 EALQSAFDVYSDEKDIGSFAMTPIY 161
           EALQ+A D +SDE+ IGS +   +Y
Sbjct: 461 EALQAATDGFSDERRIGSGSFGSVY 485


>05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,
            5828821-5828907,5828981-5829583,5829680-5829844,
            5829941-5830235,5830320-5830534,5830621-5830926,
            5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 180  TLELLSGVLATGVGDTAASWF-GSKYGTKKWTSLLRNNTVLIRTMLAASISSVVEAKTDQ 238
            T+  L G+L + V D   +W  G +        LLR N +L+     ASI S  +A   +
Sbjct: 1351 TISALPGLLESPVSDDGENWSAGQRQLFCLARVLLRRNKILVLDEATASIDSATDAVLQR 1410

Query: 239  V 239
            V
Sbjct: 1411 V 1411


>01_06_0366 -
           28779899-28780543,28780813-28781076,28781165-28781431,
           28781546-28781774,28781868-28781985,28782229-28782486,
           28782585-28782858,28782950-28783475,28784289-28784527,
           28784626-28784847,28784912-28784914,28785124-28785299,
           28786147-28786201,28786288-28786557
          Length = 1181

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 1   MLRWSLTKFPKTYTIGEAMIVTQGLTLFTIAVIGRTMNILHDPNEDMNLISSIVLVQLFA 60
           +LR  +T F    T GEA+      TL     +G          + + L+SS +   + A
Sbjct: 132 VLRQDITFFDTEMTTGEAVSRMSSDTLLIQGALGEKAG-----GKLVELLSSFIGGFIIA 186

Query: 61  F---WLFLLMISVFLVLTRTKSAVKVNTVTRKS 90
           F   WL  L++   L L    SAV    +TR S
Sbjct: 187 FTRGWLLTLVMLTSLPLIAIASAVSAQALTRVS 219


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,821,617
Number of Sequences: 37544
Number of extensions: 197930
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 6
length of query: 259
length of database: 14,793,348
effective HSP length: 81
effective length of query: 178
effective length of database: 11,752,284
effective search space: 2091906552
effective search space used: 2091906552
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)