GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001578-TA|BGIBMGA001578-PA|undefined
         (259 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 49  LISSIVLVQLFAF-WLFLLMISVFLVLTRTKSAVKVNTVTRKSFHLLASLVFMSGII 104
           LI  +  V L  F WLF  +++VF+   R+ ++  VN   R+ + LL+   F   I+
Sbjct: 263 LIGLVPTVALALFVWLFQKILAVFVFKDRSINSKVVNIDNRRCYLLLSFFFFFFNIL 319


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 208  KWTSLLRNNT-VLIRTMLAASISSVVEAKTDQVDNLI 243
            +W + + N     + T+LAAS+  + +  T+QVDN +
Sbjct: 1649 EWLTCVENEMRTTLATLLAASVKEIHQFNTEQVDNSV 1685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,716,228
Number of Sequences: 59808
Number of extensions: 223225
Number of successful extensions: 692
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 2
length of query: 259
length of database: 16,821,457
effective HSP length: 81
effective length of query: 178
effective length of database: 11,977,009
effective search space: 2131907602
effective search space used: 2131907602
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)