GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001578-TA|BGIBMGA001578-PA|undefined
         (259 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-31|CAI79280.1|  281|Caenorhabditis elegans Hypothetical...    83   2e-16
U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF106574-3|AAC78159.2|  427|Caenorhabditis elegans Hypothetical ...    28   5.8  
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL132860-31|CAI79280.1|  281|Caenorhabditis elegans Hypothetical
           protein Y56A3A.36 protein.
          Length = 281

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 41/220 (18%)

Query: 56  VQLFAFWLFLLMISVFLVLTRTKSAVKVNTVTRKSFHLLASLVFMSGIIYDVYLTSXXXX 115
           V + AFWL  + ISV +      S  + +TV RK FHL  SL+++SGI+ D   +     
Sbjct: 78  VYMVAFWLANVAISV-IFCAYVSSIGRSSTVHRKFFHLTVSLIYISGILLDPLFSWLCAW 136

Query: 116 XXXXXXXXVEALRKLNITPISEALQSAFDVYSDEKDIGSFAMTPIYLYVGLACPLILVPS 175
                   VE LR LN+ P    L     ++ D +D     +TPIY          L+P 
Sbjct: 137 LWLCIFTLVELLRYLNVPPWGGVLNEHLLIFKDAQD-SELLLTPIY----------LLP- 184

Query: 176 YEGTTLELLSGVLATGVGDTAASWFGSKYGTKKW-----------------------TSL 212
               TL + +GV A GVGD+ A+  GSK+G  KW                       T+L
Sbjct: 185 ----TLAIFAGVAAVGVGDSMAAIVGSKFGVTKWKGSKKSLEGSIAMLFSMLVFLLTTNL 240

Query: 213 -LRNNTVLIRTMLAASISSVVEAKTDQVDNLILPLVTLLV 251
            +++++  I  ++A+ ++++ EA  + +DN ILPLVT L+
Sbjct: 241 FIKDSSSTISIIIASLVATLAEAFINSMDNFILPLVTYLI 280


>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 53  IVLVQLFAF-WLFLLMISVFLVLTRTKSAVKVNT----VTRKSFHLLASLVFMS-GIIYD 106
           +VL ++  F W+F  + S   +L   ++ +K+N         +F ++AS++FM   +IY 
Sbjct: 359 LVLTEMIIFYWIFTSLASTIRMLRLKRNDIKLNVYRHFANTLAFSVIASVIFMLWSMIYH 418

Query: 107 VYLT 110
           ++ T
Sbjct: 419 IFPT 422


>AF106574-3|AAC78159.2|  427|Caenorhabditis elegans Hypothetical
           protein E02D9.1a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 67  MISVFLVLTRTKSAVKVNTVTRKSFHLLASLVFMSGII 104
           M++  ++ T+ KS  + N +T+K FH L   + +  I+
Sbjct: 1   MLTEPILFTKDKSLQRANKITKKHFHFLFLSISLQAIV 38


>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
            ZK430.1 protein.
          Length = 1650

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 185  SGVLATGVGDTAASWFGSKYGTKKWTSLLRNN--TVLIRTMLAASISSVVEAKTDQ 238
            S   A   G +  S FGSK G     SL+R +  ++ +R + A  + +V E KT++
Sbjct: 1271 SSTTAAFQGGSQTSGFGSKTGIHHRLSLIRRSLLSIELRVLPAHIVKTVGELKTEK 1326


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,094,628
Number of Sequences: 27539
Number of extensions: 175794
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 6
length of query: 259
length of database: 12,573,161
effective HSP length: 80
effective length of query: 179
effective length of database: 10,370,041
effective search space: 1856237339
effective search space used: 1856237339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)