GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001575-TA|BGIBMGA001575-PA|IPR000210|BTB,
IPR013069|BTB/POZ
         (433 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.79 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   1.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   2.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   9.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   9.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   9.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.79
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 297 DSNQLFDQILDQNDAPKITIDTKNSKVSANL--DHAK 331
           DS+ L D++ D + A +IT +   +K+  +L  DH +
Sbjct: 618 DSSSLLDKMRDSSGAGRITCEKCGNKIDTSLFVDHIR 654


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 154  FDNKSACKEKKVYKPVNINKEIMYRPSSPYIQNKKNLMTDPKPT 197
            F N   C+E  + + +N       +P    I  + N  T PKPT
Sbjct: 2170 FKNLCGCEEYPLLRTINRVLRGYAKPDPKCILGRDNDKTKPKPT 2213


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 11  NWGIYFLQRLKHFFNRTDYCDLTLQFQDNAQLKVHRLVLNAC 52
           ++G+Y  +  K FF RT   DL+   ++     + +   N C
Sbjct: 97  HYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRC 138


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 217 NISYTSQPLMVHPDTKKRYSKKSGLF 242
           NI  TS+P +  P   +   +K G F
Sbjct: 89  NIDCTSRPKLQEPQPSQHCPRKHGYF 114


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 179 PSSPYIQNKKNLMTDPKPTRY 199
           PS+P     K + T PKP ++
Sbjct: 416 PSTPSADGSKPVQTTPKPGQW 436


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 137 SSEPTPSTSNKRSYGKA 153
           SS PTPS S++ S+  A
Sbjct: 200 SSSPTPSHSSESSFSAA 216


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,129
Number of Sequences: 317
Number of extensions: 4820
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 433
length of database: 114,650
effective HSP length: 59
effective length of query: 374
effective length of database: 95,947
effective search space: 35884178
effective search space used: 35884178
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)