GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001575-TA|BGIBMGA001575-PA|IPR000210|BTB,
IPR013069|BTB/POZ
         (433 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          50   4e-08
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      48   2e-07
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.41 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   2.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   2.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   5.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   6.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 50.0 bits (114), Expect = 4e-08
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 29  YCDLTLQFQDNAQLKVHRLVLNACTEYFEVLERTCEMYEDCLVMPDDLQADVVVPIVNFM 88
           + D+TL   + A LK H++VL+AC+ YF+ L  +       ++MP D+  + +  I+ F+
Sbjct: 35  FVDVTLACNE-ASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFV 93

Query: 89  YTGQLEFRLDLLEKLYQTSLIMKMPVLTKLLKAHRASQNPQCYAPKHKSSEP 140
           Y G+++     L+ L +T+  +K+  L ++ ++     +    +P  +   P
Sbjct: 94  YRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTP 145


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 48.0 bits (109), Expect = 2e-07
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 28  DYCDLTLQFQDNAQLKVHRLVLNACTEYFEVLERTCEMYEDCLVMPDDLQADVVVPIVNF 87
           D+ D+TL   D   LK HR+VL+AC+ YF  L ++       +V+ D   +D+   +V F
Sbjct: 30  DFVDVTLAC-DGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHA-LVEF 87

Query: 88  MYTGQLEFRLDLLEKLYQTSLIMKMPVLTK 117
           +Y G++      L    +T+ ++++  LT+
Sbjct: 88  IYHGEVNVHQRSLSSFLKTAEVLRVSGLTQ 117


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 328 DHAKIISEVLKKYSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYET 387
           +H     + L+K  HL++  K +K+K L   ++K    VRE K  ++K +  + N T   
Sbjct: 423 EHKAAADQKLEK--HLIEYKKMLKIKRLFGKDRKIMDMVRE-KIIEEKRKNKNKNLTPAV 479

Query: 388 DVI 390
           ++I
Sbjct: 480 NII 482


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 11  NWGIYFLQRLKHFFNRTDYCDLTLQFQDNAQLKVHRLVLNAC 52
           ++G+Y  +  K FF RT   DL+   ++     + +   N C
Sbjct: 121 HYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRC 162


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 11  NWGIYFLQRLKHFFNRTDYCDLTLQFQDNAQLKVHRLVLNAC 52
           ++G+Y  +  K FF RT   DL+   ++     + +   N C
Sbjct: 121 HYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRC 162


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 354 ILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKLIAMG 402
           ILN  N+++   ++   N  +K+    +NF  +   I +    K+ A+G
Sbjct: 505 ILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALG 553


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 354 ILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKLIAMG 402
           ILN  N+++   ++   N  +K+    +NF  +   I +    K+ A+G
Sbjct: 505 ILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALG 553


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 214 SFCNISYTSQPLMVHPDTKKRYSKKSGLFNNSSSDSKHTTTL-DIIECKKSVD-NIFEDN 271
           +F N++ T   L+  PDT ++ ++  G  N  + D+   T L  + E   S+  + + ++
Sbjct: 884 TFANLTQTLDKLIRSPDTLRKIAQNRGT-NPLAPDAVDLTQLTSVSEWLASIKMSRYAES 942

Query: 272 YLESGI 277
           +  SG+
Sbjct: 943 FERSGV 948


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 8   KVD-NWGIYFLQRLKHFFNRTDY--CDLTLQFQDNAQLKVHRLVLNACTEYFEVLERTCE 64
           K+D  W  +  QR +  F    Y    L LQ QD A   +   + N   +   V  +  E
Sbjct: 149 KIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDLLGVPGKRNE 208

Query: 65  MYEDCLVMP 73
           +Y +C   P
Sbjct: 209 IYYNCCPEP 217


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 224 PLMVHPDTKKRYSKKSGLFNNSSSDSKHTTTLDI 257
           P + + ++ K  S  S  +++++ +++H++TLDI
Sbjct: 216 PRLTNSNSIKHESDNSD-YSHTTDENRHSSTLDI 248


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,499
Number of Sequences: 429
Number of extensions: 6031
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 12
length of query: 433
length of database: 140,377
effective HSP length: 60
effective length of query: 373
effective length of database: 114,637
effective search space: 42759601
effective search space used: 42759601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)